Variant report

Variant	rs7609303
Chromosome Location	chr2:58101385-58101386
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:58096956..58099985-chr2:58100360..58105173,5	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10167352	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10178958	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1040226	1.00[CEU][hapmap];0.84[CHB][hapmap];0.88[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11125736	1.00[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11125739	0.89[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap]
rs11895197	1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13382798	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13392894	0.91[ASN][1000 genomes]
rs17049201	0.89[EUR][1000 genomes]
rs2312140	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41439747	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4144044	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58174848	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6545675	0.89[CEU][hapmap];0.94[JPT][hapmap]
rs6709037	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6711762	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72808425	0.91[ASN][1000 genomes]
rs7563883	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7596775	0.89[CEU][hapmap];0.94[JPT][hapmap]
rs884669	1.00[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs962288	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007118	chr2:57562051-58147588	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv874196	chr2:57946148-58220320	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv834148	chr2:57979661-58119213	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1010981	chr2:58013389-58205699	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv874199	chr2:58031249-58161520	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv834159	chr2:58101262-58283655	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58090200-58104200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr2:58096800-58103800	Weak transcription	A549	lung
3	chr2:58097400-58102800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:58097400-58104400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr2:58097600-58103000	Weak transcription	Brain Substantia Nigra	brain
6	chr2:58097600-58103400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr2:58097600-58104200	Weak transcription	Brain Hippocampus Middle	brain

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