Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs13395732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13396365	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13418444	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13421201	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13421898	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62167337	0.89[AFR][1000 genomes]
rs6545566	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6545567	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6545568	1.00[EUR][1000 genomes]
rs6545569	1.00[EUR][1000 genomes]
rs6545570	1.00[EUR][1000 genomes]
rs6707281	1.00[EUR][1000 genomes]
rs6710325	1.00[EUR][1000 genomes]
rs6718145	1.00[EUR][1000 genomes]
rs6748952	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6751549	1.00[EUR][1000 genomes]
rs73940651	0.85[AMR][1000 genomes]
rs73940653	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73940654	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7582740	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7584607	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7585302	1.00[EUR][1000 genomes]
rs7596900	0.85[AMR][1000 genomes]
rs7603700	0.85[AMR][1000 genomes]
rs9679692	1.00[EUR][1000 genomes]
rs9752021	1.00[EUR][1000 genomes]
rs9808384	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9808577	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv522006	chr2:56496589-56545845	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv874170	chr2:56496589-56590865	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv834093	chr2:56538097-56708677	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1004449	chr2:56538460-56715861	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56527400-56547400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr2:56527600-56561000	Weak transcription	HSMM	muscle
3	chr2:56541400-56545400	Weak transcription	Left Ventricle	heart
4	chr2:56542800-56547400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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