Variant report

Variant	rs7603700
Chromosome Location	chr2:56525027-56525028
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10179704	0.85[AMR][1000 genomes]
rs13395732	0.85[AMR][1000 genomes]
rs13396365	0.85[AMR][1000 genomes]
rs13400915	0.95[YRI][hapmap];0.94[AFR][1000 genomes]
rs13416084	0.93[AFR][1000 genomes]
rs13416192	0.93[AFR][1000 genomes]
rs13418444	0.85[AMR][1000 genomes]
rs13421201	0.85[AMR][1000 genomes]
rs13421898	0.85[AMR][1000 genomes]
rs6545566	0.85[AMR][1000 genomes]
rs6545567	0.85[AMR][1000 genomes]
rs6748952	0.85[AMR][1000 genomes]
rs73940653	0.85[AMR][1000 genomes]
rs73940654	0.85[AMR][1000 genomes]
rs7582740	0.85[AMR][1000 genomes]
rs7584607	0.82[YRI][hapmap];0.85[AMR][1000 genomes]
rs7602941	0.87[AFR][1000 genomes]
rs7606693	0.95[YRI][hapmap];0.94[AFR][1000 genomes]
rs9808384	0.82[YRI][hapmap];0.85[AMR][1000 genomes]
rs9808577	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv522006	chr2:56496589-56545845	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv874170	chr2:56496589-56590865	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56515600-56526600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr2:56516400-56525800	Weak transcription	HSMM	muscle
3	chr2:56523200-56527400	Enhancers	Adipose Nuclei	Adipose
4	chr2:56523600-56526200	Weak transcription	Fetal Brain Female	brain
5	chr2:56524000-56526000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:56524600-56527400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr2:56524800-56526200	Enhancers	Left Ventricle	heart
8	chr2:56524800-56527400	Enhancers	Psoas Muscle	Psoas
9	chr2:56525000-56525200	Enhancers	Lung	lung
10	chr2:56525000-56525400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr2:56525000-56526400	Enhancers	Colon Smooth Muscle	Colon
12	chr2:56525000-56526800	Enhancers	Fetal Brain Male	brain
13	chr2:56525000-56527400	Enhancers	Skeletal Muscle Female	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links