Variant report

Variant	rs13416084
Chromosome Location	chr2:56525926-56525927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10183245	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10460555	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10460559	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11125623	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11125624	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11677428	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11679038	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11690074	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11902889	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12053439	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13382999	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13386846	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13390229	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13400915	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13403867	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13404434	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13410910	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13416192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13417930	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13427576	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1549029	0.85[EUR][1000 genomes]
rs17047813	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17047815	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1990758	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2032698	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2111473	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2216330	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2216331	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56832643	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58363543	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59132151	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62164360	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62164361	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62164363	0.91[ASN][1000 genomes]
rs62164364	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62167332	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62167333	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62167337	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62167338	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6545565	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6751240	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6754471	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72916125	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72916129	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72916154	0.81[EUR][1000 genomes]
rs73940663	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73940664	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73940665	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7561764	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7591011	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7602941	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7603700	0.93[AFR][1000 genomes]
rs7606693	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9309275	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9309276	0.84[EUR][1000 genomes]
rs9309277	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9808063	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9808416	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv522006	chr2:56496589-56545845	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv874170	chr2:56496589-56590865	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56515600-56526600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr2:56523200-56527400	Enhancers	Adipose Nuclei	Adipose
3	chr2:56523600-56526200	Weak transcription	Fetal Brain Female	brain
4	chr2:56524000-56526000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:56524600-56527400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr2:56524800-56526200	Enhancers	Left Ventricle	heart
7	chr2:56524800-56527400	Enhancers	Psoas Muscle	Psoas
8	chr2:56525000-56526400	Enhancers	Colon Smooth Muscle	Colon
9	chr2:56525000-56526800	Enhancers	Fetal Brain Male	brain
10	chr2:56525000-56527400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr2:56525400-56526800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr2:56525800-56526800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr2:56525800-56527600	Enhancers	HSMM	muscle

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