Variant report

Variant	rs11677428
Chromosome Location	chr2:56555837-56555838
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10183245	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10460555	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10460559	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11125623	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11125624	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11679038	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11683066	0.95[CHB][hapmap]
rs11690074	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11902889	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12053439	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13382999	0.86[ASN][1000 genomes]
rs13386846	0.83[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13390229	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13400915	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13403867	0.86[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs13404434	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13410910	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13416084	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13416192	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13417930	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13427576	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17047813	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17047815	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1990758	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2032698	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2111473	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2216330	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2216331	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56832643	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58363543	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59132151	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62164360	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62164361	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62164363	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62164364	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62167332	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62167333	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62167337	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62167338	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6545565	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6751240	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6754471	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72916125	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72916129	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73940647	0.83[AFR][1000 genomes]
rs73940663	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73940664	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73940665	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7561764	0.86[CEU][hapmap];0.95[CHB][hapmap]
rs7591011	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7602941	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7606693	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9309275	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9309276	0.83[CEU][hapmap]
rs9309277	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9808063	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9808416	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv874170	chr2:56496589-56590865	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834093	chr2:56538097-56708677	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1004449	chr2:56538460-56715861	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv874171	chr2:56545845-56727178	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv582032	chr2:56551074-56599354	Weak transcription Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56527600-56561000	Weak transcription	HSMM	muscle
2	chr2:56553400-56560400	Weak transcription	Left Ventricle	heart
3	chr2:56555400-56560800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr2:56555800-56557800	Weak transcription	Fetal Heart	heart

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