Variant report

Variant	rs11679038
Chromosome Location	chr2:56526808-56526809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10183245	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10460555	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10460559	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11125623	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11125624	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11677428	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11690074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11902889	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12053439	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13382999	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13386846	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13390229	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13400915	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13403867	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13404434	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13410910	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13416084	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13416192	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13417930	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13427576	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1549029	0.85[EUR][1000 genomes]
rs17047813	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17047815	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1990758	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2032698	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2111473	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2216330	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2216331	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56832643	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58363543	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59132151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62164360	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62164361	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62164363	0.91[ASN][1000 genomes]
rs62164364	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62167332	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62167333	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62167337	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62167338	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6545565	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6751240	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6754471	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72916125	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72916129	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72916154	0.81[EUR][1000 genomes]
rs73940643	0.89[AFR][1000 genomes]
rs73940645	0.80[AFR][1000 genomes]
rs73940663	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73940664	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73940665	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7561764	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7591011	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7602941	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7606693	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9309275	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9309276	0.84[EUR][1000 genomes]
rs9309277	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9808063	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9808416	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv522006	chr2:56496589-56545845	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv874170	chr2:56496589-56590865	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56523200-56527400	Enhancers	Adipose Nuclei	Adipose
2	chr2:56524600-56527400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr2:56524800-56527400	Enhancers	Psoas Muscle	Psoas
4	chr2:56525000-56527400	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr2:56525800-56527600	Enhancers	HSMM	muscle
6	chr2:56526000-56527200	Enhancers	H9 Cell Line	embryonic stem cell
7	chr2:56526000-56527200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr2:56526000-56527200	Enhancers	Fetal Muscle Leg	muscle
9	chr2:56526000-56527400	Enhancers	HSMMtube	muscle
10	chr2:56526000-56527600	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr2:56526200-56527000	Weak transcription	Left Ventricle	heart
12	chr2:56526400-56527200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:56526600-56527000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr2:56526600-56527200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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