Variant report

Variant	rs2111473
Chromosome Location	chr2:56522950-56522951
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:56497998..56500277-chr2:56521559..56523561,2	MCF-7	breast:
2	chr2:56501627..56504616-chr2:56522910..56525116,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10183245	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10460555	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10460559	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11125623	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11125624	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11677428	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11679038	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11683066	0.95[CHB][hapmap]
rs11690074	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11902889	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12053439	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13382999	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13386846	0.83[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13390229	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13400915	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13403867	0.86[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13404434	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13410910	0.85[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13416084	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13416192	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13417930	0.84[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13427576	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17047813	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17047815	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1990758	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2032698	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2216330	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2216331	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56832643	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58363543	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59132151	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62164360	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62164361	0.94[ASN][1000 genomes]
rs62164363	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62164364	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62167332	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62167333	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62167337	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62167338	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6545565	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6714529	0.81[AFR][1000 genomes]
rs6751240	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6754471	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72916125	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72916129	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73940663	0.85[EUR][1000 genomes]
rs73940664	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73940665	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7561764	0.86[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7591011	0.91[CHB][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7602941	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7606693	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309275	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9309276	0.83[CEU][hapmap]
rs9309277	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9808063	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9808416	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv522006	chr2:56496589-56545845	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv874170	chr2:56496589-56590865	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56515600-56526600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr2:56516400-56523400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr2:56516400-56525800	Weak transcription	HSMM	muscle
4	chr2:56516800-56524800	Weak transcription	Psoas Muscle	Psoas
5	chr2:56517200-56524800	Weak transcription	Left Ventricle	heart
6	chr2:56520400-56523200	Weak transcription	Adipose Nuclei	Adipose
7	chr2:56522800-56523400	Weak transcription	Fetal Brain Male	brain

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