Variant report

Variant	rs13400915
Chromosome Location	chr2:56528231-56528232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10183245	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10460555	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10460559	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11125623	0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11125624	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11677428	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11677608	0.81[EUR][1000 genomes]
rs11679038	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11683066	0.95[CHB][hapmap]
rs11690074	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11902889	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12053439	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13382999	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13386846	0.91[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13390229	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13403867	0.91[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13404434	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13410910	0.95[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13416084	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13416192	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13417930	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13427576	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1549029	0.87[EUR][1000 genomes]
rs17047813	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17047815	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17047819	0.81[EUR][1000 genomes]
rs17047821	0.81[EUR][1000 genomes]
rs1990758	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2032698	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2111473	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2193480	0.81[EUR][1000 genomes]
rs2216330	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2216331	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56832643	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58363543	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59132151	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62164360	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62164361	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62164363	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62164364	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62167332	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62167333	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62167337	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62167338	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6545565	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6751240	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6754471	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6760801	0.81[EUR][1000 genomes]
rs72916125	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72916129	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72916154	0.83[EUR][1000 genomes]
rs73940663	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73940664	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73940665	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7561764	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7584607	0.87[YRI][hapmap]
rs7591011	0.91[CHB][hapmap];0.93[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7602941	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7603700	0.95[YRI][hapmap];0.94[AFR][1000 genomes]
rs7606693	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9309275	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9309276	0.86[EUR][1000 genomes]
rs9309277	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9808063	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9808384	0.87[YRI][hapmap]
rs9808416	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv522006	chr2:56496589-56545845	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv874170	chr2:56496589-56590865	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56527200-56530000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr2:56527400-56531200	Weak transcription	Adipose Nuclei	Adipose
3	chr2:56527400-56540600	Weak transcription	Left Ventricle	heart
4	chr2:56527400-56547400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr2:56527600-56561000	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links