Variant report

Variant	rs1549029
Chromosome Location	chr2:56576602-56576603
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10460555	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs10460559	0.86[EUR][1000 genomes]
rs11125623	0.88[EUR][1000 genomes]
rs11125624	0.85[EUR][1000 genomes]
rs11677608	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11679038	0.85[EUR][1000 genomes]
rs11690074	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs11902889	0.85[EUR][1000 genomes]
rs12053439	0.83[EUR][1000 genomes]
rs12616518	1.00[YRI][hapmap]
rs13386846	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs13390229	0.83[EUR][1000 genomes]
rs13400915	0.87[EUR][1000 genomes]
rs13403867	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs13404434	0.86[EUR][1000 genomes]
rs13410910	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs13416084	0.85[EUR][1000 genomes]
rs13416192	0.85[EUR][1000 genomes]
rs13417930	0.86[CEU][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs17047813	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs17047815	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs17047819	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17047821	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1990758	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs2032698	0.83[EUR][1000 genomes]
rs2193480	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2216330	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs56832643	0.87[EUR][1000 genomes]
rs58363543	0.84[EUR][1000 genomes]
rs59132151	0.85[EUR][1000 genomes]
rs62164361	0.81[EUR][1000 genomes]
rs62167332	0.83[EUR][1000 genomes]
rs62167333	0.82[EUR][1000 genomes]
rs62167337	0.82[EUR][1000 genomes]
rs62167338	0.81[EUR][1000 genomes]
rs6545565	0.82[EUR][1000 genomes]
rs6751240	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs6754471	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs6760801	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72916125	0.86[EUR][1000 genomes]
rs72916129	0.84[EUR][1000 genomes]
rs72916154	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73940663	0.86[EUR][1000 genomes]
rs73940664	0.86[EUR][1000 genomes]
rs73940665	0.84[EUR][1000 genomes]
rs7561764	0.87[CEU][hapmap]
rs7606693	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs9309275	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs9309276	0.84[CEU][hapmap]
rs9309277	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs9808063	0.86[CEU][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs9808416	0.87[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv874170	chr2:56496589-56590865	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834093	chr2:56538097-56708677	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1004449	chr2:56538460-56715861	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv874171	chr2:56545845-56727178	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv582032	chr2:56551074-56599354	Weak transcription Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56562400-56577600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr2:56574600-56586400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr2:56575200-56576800	Enhancers	Fetal Brain Male	brain
4	chr2:56576000-56603000	Weak transcription	HSMM	muscle
5	chr2:56576000-56613200	Weak transcription	Left Ventricle	heart

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