Variant report

Variant	rs13390229
Chromosome Location	chr2:56516365-56516366
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10183245	0.91[ASN][1000 genomes]
rs10460555	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10460559	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11125623	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11125624	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11677428	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11679038	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11690074	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11902889	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12053439	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13382999	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13386846	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13400915	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13403867	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13404434	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13410910	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13416084	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13416192	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13417930	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13427576	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1549029	0.83[EUR][1000 genomes]
rs17047813	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17047815	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1990758	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2032698	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2111473	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2216330	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2216331	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56832643	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58363543	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59132151	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62164360	0.94[ASN][1000 genomes]
rs62164361	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62164363	0.91[ASN][1000 genomes]
rs62164364	0.92[ASN][1000 genomes]
rs62167332	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62167333	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62167337	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62167338	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6545565	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6751240	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6754471	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72916125	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72916129	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73940663	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73940664	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73940665	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7561764	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7591011	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7602941	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7606693	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9309275	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9309276	0.82[EUR][1000 genomes]
rs9309277	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9808063	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9808416	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv522006	chr2:56496589-56545845	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv874170	chr2:56496589-56590865	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56513400-56516400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr2:56514000-56516400	Enhancers	HSMM	muscle
3	chr2:56514000-56517000	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr2:56514200-56517800	Enhancers	Fetal Intestine Large	intestine
5	chr2:56514600-56516600	Weak transcription	Psoas Muscle	Psoas
6	chr2:56515000-56517200	Enhancers	Left Ventricle	heart
7	chr2:56515200-56516400	Enhancers	Brain Germinal Matrix	brain
8	chr2:56515200-56516400	Weak transcription	Fetal Intestine Small	intestine
9	chr2:56515400-56516400	Weak transcription	HUVEC	blood vessel
10	chr2:56515400-56517000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr2:56515600-56526600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr2:56516000-56517400	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links