Variant report

Variant	rs62167338
Chromosome Location	chr2:56544602-56544603
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10183245	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10460555	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10460559	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11125623	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11125624	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11677428	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11679038	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11690074	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11902889	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12053439	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13382999	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13386846	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13390229	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13400915	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13403867	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13404434	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13410910	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13416084	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13416192	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13417930	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13427576	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1549029	0.81[EUR][1000 genomes]
rs17047813	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17047815	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1990758	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2032698	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2111473	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2216330	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2216331	0.94[ASN][1000 genomes]
rs56832643	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58363543	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59132151	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62164360	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62164361	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62164363	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62164364	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62167332	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62167333	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62167337	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6545565	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6751240	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6754471	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72916125	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72916129	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73940663	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73940664	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73940665	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7561764	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7591011	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7602941	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7606693	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9309275	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9309276	0.80[EUR][1000 genomes]
rs9309277	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9808063	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9808416	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv522006	chr2:56496589-56545845	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv874170	chr2:56496589-56590865	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv834093	chr2:56538097-56708677	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1004449	chr2:56538460-56715861	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56527400-56547400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr2:56527600-56561000	Weak transcription	HSMM	muscle
3	chr2:56541400-56545400	Weak transcription	Left Ventricle	heart
4	chr2:56542800-56547400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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