Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10179285	0.94[CHD][hapmap]
rs10188778	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10931256	0.98[ASN][1000 genomes]
rs11679597	0.98[ASN][1000 genomes]
rs11685506	0.96[ASN][1000 genomes]
rs11891963	0.81[ASN][1000 genomes]
rs12612668	0.94[CHD][hapmap]
rs12616053	0.94[CHD][hapmap]
rs13021220	0.82[EUR][1000 genomes]
rs2122870	0.94[CHD][hapmap]
rs3100021	0.94[CHD][hapmap]
rs3107390	0.81[EUR][1000 genomes]
rs3107392	0.82[EUR][1000 genomes]
rs3114921	0.87[CHD][hapmap]
rs3114942	1.00[CHB][hapmap];0.82[CHD][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs3114943	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3114948	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3114949	0.87[CHD][hapmap]
rs3114951	0.94[CHD][hapmap]
rs4352202	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4531895	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4583425	0.82[EUR][1000 genomes]
rs6705578	0.94[CHD][hapmap]
rs6742050	0.81[EUR][1000 genomes]
rs7559533	0.87[CHD][hapmap]
rs7572652	0.82[EUR][1000 genomes]
rs9646805	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428069	chr2:187575692-187766209	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3495864	chr2:187633495-187686087	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3495865	chr2:187633495-187686087	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3446718	chr2:187663495-187686087	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv3345821	chr2:187663495-187692736	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187674400-187685400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:187685000-187686400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:187685200-187685600	Enhancers	Osteobl	bone

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