Variant report

Variant	rs11891963
Chromosome Location	chr2:187686062-187686063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10179285	0.82[CHD][hapmap]
rs10179727	0.81[ASN][1000 genomes]
rs10931254	0.88[CEU][hapmap];0.82[GIH][hapmap]
rs10931256	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1123176	0.87[CEU][hapmap]
rs11679597	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11683459	0.85[CEU][hapmap]
rs11685506	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11695399	0.82[GIH][hapmap]
rs12612668	0.82[CHD][hapmap];0.90[JPT][hapmap]
rs12616053	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs12621915	0.86[CEU][hapmap]
rs1451557	0.81[JPT][hapmap]
rs16828182	0.88[CEU][hapmap]
rs16828214	0.88[CEU][hapmap]
rs2122870	0.82[CHD][hapmap];0.90[JPT][hapmap]
rs3100021	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs3114942	0.88[CHB][hapmap]
rs3114951	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs6705578	0.82[CHD][hapmap]
rs7559533	0.88[CHD][hapmap];0.81[JPT][hapmap]
rs7584329	0.88[CEU][hapmap];0.88[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428069	chr2:187575692-187766209	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3495864	chr2:187633495-187686087	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3495865	chr2:187633495-187686087	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3446718	chr2:187663495-187686087	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv3345821	chr2:187663495-187692736	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11891963	DNAJC10	cis	cerebellum	SCAN
rs11891963	CALCRL	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187685000-187686400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:187685400-187686400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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