Variant report

Variant	rs10180216
Chromosome Location	chr2:180228501-180228502
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10179699	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10187410	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs12328936	1.00[EUR][1000 genomes]
rs13388867	0.93[EUR][1000 genomes]
rs13403994	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13410126	0.84[EUR][1000 genomes]
rs13415487	0.95[EUR][1000 genomes]
rs13422958	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60122403	1.00[EUR][1000 genomes]
rs60931136	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61258504	0.97[EUR][1000 genomes]
rs6737562	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72952360	1.00[EUR][1000 genomes]
rs72962221	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9807927	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004693	chr2:179933683-180265288	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv583866	chr2:180141614-180233627	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180227200-180228600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links