Variant report

Variant	rs13410126
Chromosome Location	chr2:180275371-180275372
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10179699	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10180216	0.84[EUR][1000 genomes]
rs10187410	0.88[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12328936	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13388867	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13403994	0.82[EUR][1000 genomes]
rs13422958	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60122403	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60931136	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61258504	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6737562	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72952360	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72962221	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9807927	0.88[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv962512	chr2:180271870-180286262	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180275200-180275800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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