Variant report

Variant	rs10180357
Chromosome Location	chr2:211431007-211431008
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11684318	0.94[ASN][1000 genomes]
rs12991680	0.87[EUR][1000 genomes]
rs13385991	0.91[EUR][1000 genomes]
rs13414563	0.86[EUR][1000 genomes]
rs2302911	0.83[EUR][1000 genomes]
rs2371001	0.81[EUR][1000 genomes]
rs28499505	0.86[EUR][1000 genomes]
rs4309518	0.89[EUR][1000 genomes]
rs6435577	0.87[EUR][1000 genomes]
rs6714124	0.86[EUR][1000 genomes]
rs6755648	0.88[EUR][1000 genomes]
rs6760497	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7422569	0.87[EUR][1000 genomes]
rs7576225	0.93[EUR][1000 genomes]
rs7583733	0.87[EUR][1000 genomes]
rs7588072	0.94[ASN][1000 genomes]
rs9288418	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398091	chr2:211315261-211634200	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211418600-211443200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:211423600-211432600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr2:211423800-211432600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:211426400-211432400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:211428400-211432600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr2:211430200-211431400	Genic enhancers	Fetal Intestine Large	intestine
7	chr2:211430400-211431200	Transcr. at gene 5' and 3'	Liver	Liver
8	chr2:211430800-211438000	Weak transcription	Fetal Kidney	kidney
9	chr2:211431000-211432400	Weak transcription	Fetal Intestine Small	intestine
10	chr2:211431000-211433200	Genic enhancers	Hela-S3	cervix
11	chr2:211431000-211436200	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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