Variant report

Variant	rs6714124
Chromosome Location	chr2:211436065-211436066
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10165443	0.86[GIH][hapmap];0.81[TSI][hapmap]
rs10180357	0.86[EUR][1000 genomes]
rs12694203	0.86[GIH][hapmap];0.81[TSI][hapmap]
rs12991680	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13385991	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13414563	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2302911	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2371000	0.83[GIH][hapmap]
rs2371001	0.96[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28499505	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4309518	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4399666	0.86[GIH][hapmap];0.81[TSI][hapmap]
rs6435577	1.00[CEU][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6734696	0.81[GIH][hapmap]
rs6755648	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6760497	0.83[EUR][1000 genomes]
rs7422569	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7573258	0.86[GIH][hapmap];0.81[TSI][hapmap]
rs7576225	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7583733	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398091	chr2:211315261-211634200	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6714124	ACADL	cis	parietal	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211418600-211443200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:211430800-211438000	Weak transcription	Fetal Kidney	kidney
3	chr2:211431000-211436200	Weak transcription	Aorta	Aorta
4	chr2:211433000-211438400	Genic enhancers	Liver	Liver
5	chr2:211433200-211437600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr2:211433200-211442200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr2:211433200-211442200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr2:211434000-211442000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr2:211434200-211436200	Genic enhancers	Hela-S3	cervix
10	chr2:211434400-211436600	Weak transcription	Fetal Intestine Small	intestine
11	chr2:211434400-211439800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr2:211435200-211448200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr2:211435800-211447400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr2:211436000-211436600	Enhancers	Fetal Intestine Large	intestine

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