Variant report

Variant	rs10180973
Chromosome Location	chr2:212630129-212630130
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10168783	0.83[AFR][1000 genomes]
rs10187763	0.83[AFR][1000 genomes]
rs10497954	1.00[ASW][hapmap]
rs12464931	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12465301	1.00[CEU][hapmap];0.92[GIH][hapmap];0.88[AMR][1000 genomes]
rs12473495	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12473706	1.00[CEU][hapmap]
rs12475709	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13395386	0.83[AFR][1000 genomes]
rs4672624	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7421024	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs7426163	1.00[CEU][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212621200-212632800	Weak transcription	Aorta	Aorta
2	chr2:212627800-212631000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:212628800-212631400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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