Variant report

Variant	rs7426163
Chromosome Location	chr2:212594673-212594674
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10180973	1.00[CEU][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes]
rs12464931	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12465301	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12473495	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12473706	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs12475709	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12476659	0.88[JPT][hapmap]
rs4672624	1.00[CEU][hapmap];0.83[JPT][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs7423708	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212571200-212594800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:212583600-212595400	Weak transcription	Brain Anterior Caudate	brain
3	chr2:212587400-212595000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:212594400-212595000	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr2:212594400-212595200	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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