Variant report

Variant	rs10183734
Chromosome Location	chr2:179747421-179747422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:179745902..179747990-chr2:179754251..179756238,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10165253	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10183737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13000459	0.94[ASN][1000 genomes]
rs7578159	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949133	chr2:179711376-180124327	Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv875455	chr2:179732845-179909467	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179702200-179749200	Weak transcription	Thymus	Thymus
2	chr2:179710800-179782800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr2:179713400-179778600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr2:179717000-179790600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr2:179728200-179753800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr2:179729200-179749000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr2:179729400-179753600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr2:179730600-179749000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr2:179730800-179750600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr2:179730800-179756000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr2:179730800-179770800	Weak transcription	Primary B cells from peripheral blood	blood
12	chr2:179733200-179779200	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr2:179733800-179754200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr2:179735400-179760800	Weak transcription	Right Ventricle	heart
15	chr2:179737200-179749000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr2:179739800-179755000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr2:179742600-179750400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr2:179743000-179750800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr2:179744600-179753600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr2:179745200-179749600	Strong transcription	Fetal Muscle Leg	muscle
21	chr2:179745400-179749000	Weak transcription	HSMMtube	muscle
22	chr2:179746200-179747800	Weak transcription	Fetal Heart	heart
23	chr2:179746800-179747600	Enhancers	Aorta	Aorta
24	chr2:179747000-179747600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr2:179747000-179747600	Enhancers	HMEC	breast
26	chr2:179747000-179748000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr2:179747000-179749600	Weak transcription	Primary hematopoietic stem cells	blood
28	chr2:179747000-179753600	Strong transcription	Primary T cells from cord blood	blood
29	chr2:179747200-179747600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr2:179747200-179747800	Enhancers	Ovary	ovary
31	chr2:179747200-179747800	Flanking Active TSS	HUVEC	blood vessel
32	chr2:179747200-179748000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr2:179747200-179748000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr2:179747200-179748200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr2:179747200-179748400	Enhancers	NHDF-Ad	bronchial
36	chr2:179747200-179748600	Strong transcription	Primary B cells from cord blood	blood
37	chr2:179747200-179748600	Enhancers	NHEK	skin
38	chr2:179747200-179748600	Enhancers	NHLF	lung
39	chr2:179747200-179748600	Enhancers	Osteobl	bone
40	chr2:179747400-179747600	Flanking Active TSS	NH-A	brain
41	chr2:179747400-179747800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr2:179747400-179747800	Flanking Active TSS	Adipose Nuclei	Adipose
43	chr2:179747400-179747800	Enhancers	Gastric	stomach
44	chr2:179747400-179747800	Enhancers	Pancreas	Pancrea
45	chr2:179747400-179747800	Enhancers	Psoas Muscle	Psoas
46	chr2:179747400-179748000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr2:179747400-179748000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
48	chr2:179747400-179748000	Enhancers	Left Ventricle	heart
49	chr2:179747400-179748000	Enhancers	Right Atrium	heart
50	chr2:179747400-179748000	Enhancers	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links