Variant report

Variant	rs7578159
Chromosome Location	chr2:179749052-179749053
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10183734	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10183737	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1873163	0.92[ASN][1000 genomes]
rs1873164	0.92[ASN][1000 genomes]
rs60105920	0.95[ASN][1000 genomes]
rs6716304	0.84[ASN][1000 genomes]
rs6752756	0.95[ASN][1000 genomes]
rs6755035	0.91[ASN][1000 genomes]
rs73973181	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949133	chr2:179711376-180124327	Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv875455	chr2:179732845-179909467	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179702200-179749200	Weak transcription	Thymus	Thymus
2	chr2:179710800-179782800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr2:179713400-179778600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr2:179717000-179790600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr2:179728200-179753800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr2:179729400-179753600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr2:179730800-179750600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr2:179730800-179756000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr2:179730800-179770800	Weak transcription	Primary B cells from peripheral blood	blood
10	chr2:179733200-179779200	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr2:179733800-179754200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr2:179735400-179760800	Weak transcription	Right Ventricle	heart
13	chr2:179739800-179755000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr2:179742600-179750400	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr2:179743000-179750800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr2:179744600-179753600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr2:179745200-179749600	Strong transcription	Fetal Muscle Leg	muscle
18	chr2:179747000-179749600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr2:179747000-179753600	Strong transcription	Primary T cells from cord blood	blood
20	chr2:179747800-179749400	Weak transcription	Psoas Muscle	Psoas
21	chr2:179747800-179750800	Weak transcription	Pancreas	Pancrea
22	chr2:179748000-179749400	Enhancers	HMEC	breast
23	chr2:179748000-179752400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr2:179748000-179754000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr2:179748000-179760800	Weak transcription	Right Atrium	heart
26	chr2:179748400-179749800	Genic enhancers	Fetal Heart	heart
27	chr2:179748400-179756000	Weak transcription	Ovary	ovary
28	chr2:179748600-179749200	Weak transcription	Left Ventricle	heart
29	chr2:179748600-179750400	Weak transcription	HUVEC	blood vessel
30	chr2:179748600-179750800	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr2:179748600-179750800	Weak transcription	Osteobl	bone
32	chr2:179748600-179761400	Weak transcription	Primary B cells from cord blood	blood
33	chr2:179748800-179754000	Weak transcription	Adipose Nuclei	Adipose
34	chr2:179749000-179749200	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr2:179749000-179749400	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr2:179749000-179749600	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr2:179749000-179749800	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr2:179749000-179749800	Strong transcription	HSMMtube	muscle
39	chr2:179749000-179750200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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