Variant report

Variant	rs10184223
Chromosome Location	chr2:36735024-36735025
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:36726450..36728384-chr2:36733082..36736034,2	MCF-7	breast:
2	chr2:36099243..36100067-chr2:36734209..36735134,2	MCF-7	breast:
3	chr2:36581721..36584860-chr2:36733374..36737959,4	MCF-7	breast:
4	chr2:36730615..36732840-chr2:36733179..36736137,2	MCF-7	breast:
5	chr2:36579071..36579733-chr2:36734184..36735079,2	MCF-7	breast:
6	chr2:36579157..36579830-chr2:36734235..36735159,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150938	Chromatin interaction
ENSG00000260025	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10180792	0.88[JPT][hapmap]
rs11681392	0.81[EUR][1000 genomes]
rs11694761	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1523785	0.91[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2287082	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2293254	0.96[CEU][hapmap];0.89[CHB][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3755197	0.87[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3770822	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs3770832	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3770833	1.00[CEU][hapmap];0.89[CHB][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3815552	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs5003670	0.87[JPT][hapmap]
rs848522	0.91[CHB][hapmap]
rs848564	0.91[CHB][hapmap]
rs861050	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1010985	chr2:36707157-36942066	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv535642	chr2:36707157-36942066	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36704800-36736200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:36705000-36743200	Weak transcription	Brain Germinal Matrix	brain
3	chr2:36707000-36740600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:36708600-36739000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:36709200-36739000	Weak transcription	Colonic Mucosa	Colon
6	chr2:36710000-36743400	Weak transcription	Primary T cells from cord blood	blood
7	chr2:36711400-36739200	Weak transcription	Primary B cells from cord blood	blood
8	chr2:36713600-36739200	Weak transcription	Fetal Muscle Leg	muscle
9	chr2:36713800-36789600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr2:36717400-36744400	Weak transcription	Brain Angular Gyrus	brain
11	chr2:36720000-36760600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr2:36720400-36739200	Weak transcription	Fetal Heart	heart
13	chr2:36720800-36739200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr2:36721400-36737200	Strong transcription	HSMM	muscle
15	chr2:36721800-36746000	Strong transcription	HUVEC	blood vessel
16	chr2:36722400-36739800	Weak transcription	Brain Hippocampus Middle	brain
17	chr2:36722600-36752400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr2:36724000-36740600	Weak transcription	Psoas Muscle	Psoas
19	chr2:36725200-36739200	Strong transcription	NH-A	brain
20	chr2:36725200-36756800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr2:36726800-36751800	Strong transcription	Skeletal Muscle Female	skeletal muscle
22	chr2:36727000-36739200	Weak transcription	Colon Smooth Muscle	Colon
23	chr2:36727000-36739600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr2:36727200-36739200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr2:36727400-36738400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr2:36727400-36757200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr2:36727600-36737000	Weak transcription	Esophagus	oesophagus
28	chr2:36727600-36739200	Weak transcription	Fetal Brain Female	brain
29	chr2:36727600-36739200	Weak transcription	Fetal Kidney	kidney
30	chr2:36727600-36739400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr2:36727600-36739400	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr2:36727600-36739400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr2:36727600-36739800	Weak transcription	Right Ventricle	heart
34	chr2:36727600-36740800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr2:36727600-36743600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr2:36728000-36737600	Weak transcription	Primary hematopoietic stem cells	blood
37	chr2:36728000-36738800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr2:36728000-36739000	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr2:36728000-36739200	Weak transcription	Fetal Lung	lung
40	chr2:36728000-36739400	Weak transcription	Duodenum Mucosa	Duodenum
41	chr2:36728400-36749200	Weak transcription	Fetal Brain Male	brain
42	chr2:36728600-36737000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr2:36729200-36739000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr2:36729200-36740600	Weak transcription	Liver	Liver
45	chr2:36729400-36738000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr2:36729400-36738800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr2:36729400-36739200	Weak transcription	Fetal Muscle Trunk	muscle
48	chr2:36729600-36739400	Weak transcription	Brain Substantia Nigra	brain
49	chr2:36729600-36790200	Weak transcription	Small Intestine	intestine
50	chr2:36730000-36737200	Strong transcription	Muscle Satellite Cultured Cells	--

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