Variant report

Variant	rs3770822
Chromosome Location	chr2:36756909-36756910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36753244..36754904-chr2:36755959..36758615,2	K562	blood:
2	chr2:36755319..36758210-chr2:36763751..36765429,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10184223	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs10189344	0.86[JPT][hapmap]
rs11694761	0.86[EUR][1000 genomes]
rs1523785	0.80[CEU][hapmap]
rs2287082	0.82[EUR][1000 genomes]
rs2293254	0.84[CEU][hapmap];0.87[EUR][1000 genomes]
rs3755197	0.84[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3770821	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3770832	0.80[CEU][hapmap];0.86[EUR][1000 genomes]
rs3770833	0.80[CEU][hapmap];0.86[EUR][1000 genomes]
rs3815552	0.83[EUR][1000 genomes]
rs6721081	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010985	chr2:36707157-36942066	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv535642	chr2:36707157-36942066	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3770822	FEZ2	cis	Whole Blood	GTEx

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36713800-36789600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:36720000-36760600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:36727400-36757200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr2:36729600-36790200	Weak transcription	Small Intestine	intestine
5	chr2:36733200-36774200	Weak transcription	Fetal Thymus	thymus
6	chr2:36733400-36764400	Weak transcription	Pancreas	Pancrea
7	chr2:36739000-36778200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr2:36739400-36757400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr2:36744800-36764200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr2:36745000-36757800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr2:36747800-36766200	Weak transcription	Thymus	Thymus
12	chr2:36747800-36768800	Weak transcription	Colonic Mucosa	Colon
13	chr2:36747800-36774200	Weak transcription	Liver	Liver
14	chr2:36748000-36757400	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr2:36748000-36757400	Weak transcription	Brain Substantia Nigra	brain
16	chr2:36748000-36764400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr2:36748000-36764400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr2:36748200-36757400	Weak transcription	Fetal Heart	heart
19	chr2:36749200-36758000	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr2:36749600-36764200	Weak transcription	Brain Germinal Matrix	brain
21	chr2:36749600-36765000	Weak transcription	Fetal Brain Male	brain
22	chr2:36749600-36765200	Weak transcription	Right Ventricle	heart
23	chr2:36749800-36764200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr2:36749800-36764200	Weak transcription	Spleen	Spleen
25	chr2:36750000-36765200	Weak transcription	Gastric	stomach
26	chr2:36750600-36757000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr2:36750800-36757200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr2:36750800-36757200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr2:36750800-36759000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr2:36750800-36763200	Weak transcription	Fetal Muscle Leg	muscle
31	chr2:36750800-36764400	Weak transcription	Esophagus	oesophagus
32	chr2:36750800-36783200	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr2:36751000-36757000	Weak transcription	Brain Angular Gyrus	brain
34	chr2:36751000-36758000	Weak transcription	Aorta	Aorta
35	chr2:36751000-36759000	Weak transcription	Fetal Kidney	kidney
36	chr2:36751000-36759000	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr2:36751000-36761000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr2:36751000-36764200	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr2:36751000-36824200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr2:36751200-36757200	Weak transcription	Primary B cells from peripheral blood	blood
41	chr2:36751200-36757400	Weak transcription	Brain Cingulate Gyrus	brain
42	chr2:36751200-36758000	Weak transcription	Duodenum Mucosa	Duodenum
43	chr2:36751200-36774200	Weak transcription	Psoas Muscle	Psoas
44	chr2:36751400-36763600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr2:36751400-36764200	Weak transcription	Fetal Brain Female	brain
46	chr2:36751400-36764200	Weak transcription	Fetal Muscle Trunk	muscle
47	chr2:36751600-36759000	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr2:36751600-36759600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr2:36751600-36764400	Weak transcription	Colon Smooth Muscle	Colon
50	chr2:36751600-36764400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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