Variant report

Variant	rs10184897
Chromosome Location	chr2:33455363-33455364
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:33453270..33456098-chr2:33456709..33459477,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10048782	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10166821	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10179329	1.00[AMR][1000 genomes]
rs10189539	1.00[AMR][1000 genomes]
rs10192129	1.00[AMR][1000 genomes]
rs10192944	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10202001	1.00[AMR][1000 genomes]
rs10211394	1.00[AMR][1000 genomes]
rs13398513	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs13402045	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs59286165	1.00[AMR][1000 genomes]
rs6543702	1.00[AMR][1000 genomes]
rs6727534	1.00[AMR][1000 genomes]
rs6729956	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6740275	1.00[AMR][1000 genomes]
rs6742773	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6745742	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs6758391	1.00[AMR][1000 genomes]
rs72855789	1.00[AMR][1000 genomes]
rs9308933	0.83[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998167	chr2:33074313-33541100	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv535623	chr2:33074313-33541100	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1005435	chr2:33136117-33747159	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
4	nsv535624	chr2:33136117-33747159	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
5	nsv873790	chr2:33369582-33466483	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33403800-33489800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:33414600-33455400	Weak transcription	Fetal Stomach	stomach
3	chr2:33442600-33467600	Weak transcription	Ovary	ovary
4	chr2:33442800-33471400	Weak transcription	Psoas Muscle	Psoas
5	chr2:33446600-33461200	Weak transcription	HUVEC	blood vessel
6	chr2:33446800-33461200	Weak transcription	Fetal Lung	lung
7	chr2:33447400-33468200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr2:33448400-33461400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:33449200-33456200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr2:33449400-33461400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr2:33449400-33466200	Weak transcription	Fetal Heart	heart
12	chr2:33449400-33475400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr2:33450800-33456400	Weak transcription	NH-A	brain
14	chr2:33450800-33461400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr2:33451400-33461200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr2:33451800-33456000	Weak transcription	Aorta	Aorta
17	chr2:33451800-33466200	Weak transcription	Left Ventricle	heart
18	chr2:33452600-33455400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr2:33453400-33456200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr2:33454400-33456200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr2:33454400-33456200	Enhancers	Muscle Satellite Cultured Cells	--
22	chr2:33454600-33455400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr2:33454600-33455400	Enhancers	NHLF	lung
24	chr2:33454600-33455800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr2:33454600-33456000	Enhancers	NHDF-Ad	bronchial
26	chr2:33454600-33456800	Enhancers	Osteobl	bone
27	chr2:33454800-33455600	Enhancers	Brain Germinal Matrix	brain
28	chr2:33454800-33455600	Enhancers	A549	lung
29	chr2:33454800-33455800	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr2:33455000-33455400	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr2:33455000-33455800	Enhancers	Fetal Kidney	kidney
32	chr2:33455200-33455800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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