Variant report

Variant	rs10185771
Chromosome Location	chr2:86176218-86176219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10153710	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2218035	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2366956	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2366958	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs735738	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7603766	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs9309628	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10185771	IMMT	Cis_1M	lymphoblastoid	RTeQTL
rs10185771	MRPL35	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86175000-86183600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:86175800-86177600	Enhancers	Pancreas	Pancrea
3	chr2:86175800-86180600	Enhancers	Liver	Liver
4	chr2:86176200-86177000	Enhancers	HepG2	liver
5	chr2:86176200-86177200	Enhancers	Fetal Lung	lung
6	chr2:86176200-86177200	Enhancers	Left Ventricle	heart
7	chr2:86176200-86177200	Enhancers	Right Atrium	heart
8	chr2:86176200-86177200	Enhancers	Spleen	Spleen
9	chr2:86176200-86180400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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