Variant report

Variant	rs2366958
Chromosome Location	chr2:86169989-86169990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10153710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10185771	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2218035	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2366956	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs735738	1.00[CEU][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7603766	0.92[AMR][1000 genomes]
rs9309628	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs2366958	IMMT	cis	parietal	SCAN
rs2366958	MRPL35	Cis_1M	lymphoblastoid	RTeQTL
rs2366958	MRPL35	cis	cerebellum	SCAN
rs2366958	C2orf23	cis	multi-tissue	Pritchard
rs2366958	ST3GAL5	cis	cerebellum	SCAN
rs2366958	REEP1	cis	parietal	SCAN
rs2366958	C2orf51	cis	cerebellum	SCAN
rs2366958	IMMT	cis	lymphoblastoid	seeQTL
rs2366958	MRPL35	cis	parietal	SCAN
rs2366958	IMMT	cis	cerebellum	SCAN
rs2366958	IMMT	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86168400-86170200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:86169800-86171800	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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