Variant report

Variant	rs1018633
Chromosome Location	chr13:79957841-79957842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:79955549..79959842-chr13:79960157..79964525,5	K562	blood:

Variant related genes	Relation type
ENSG00000252496	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11843203	0.85[GIH][hapmap];1.00[TSI][hapmap]
rs17071629	1.00[TSI][hapmap]
rs41364649	0.85[GIH][hapmap];1.00[TSI][hapmap]
rs6563111	1.00[TSI][hapmap]
rs7337908	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900586	chr13:79892722-79968467	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv832657	chr13:79904978-80099108	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79942000-79967400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:79946000-79960000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr13:79946400-79969200	Weak transcription	Fetal Kidney	kidney
4	chr13:79951200-79959800	Weak transcription	Fetal Heart	heart
5	chr13:79951200-79962200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr13:79951200-79979200	Weak transcription	Esophagus	oesophagus
7	chr13:79951400-79959600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr13:79951400-79960000	Weak transcription	NHDF-Ad	bronchial
9	chr13:79951400-79962200	Weak transcription	Lung	lung
10	chr13:79951600-79960000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr13:79951600-79960000	Weak transcription	NH-A	brain
12	chr13:79951600-79965400	Weak transcription	Brain Angular Gyrus	brain
13	chr13:79951600-79969000	Weak transcription	Fetal Brain Male	brain
14	chr13:79951800-79960000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr13:79951800-79961800	Weak transcription	Brain Germinal Matrix	brain
16	chr13:79951800-79978200	Weak transcription	Aorta	Aorta
17	chr13:79952000-79967200	Weak transcription	Brain Hippocampus Middle	brain
18	chr13:79952000-79967600	Weak transcription	Gastric	stomach
19	chr13:79952200-79960000	Weak transcription	Ovary	ovary
20	chr13:79952200-79967600	Weak transcription	Pancreas	Pancrea
21	chr13:79952200-79967600	Weak transcription	Spleen	Spleen
22	chr13:79952400-79958000	Weak transcription	HepG2	liver
23	chr13:79952400-79960000	Weak transcription	NHLF	lung
24	chr13:79952400-79960000	Weak transcription	Osteobl	bone
25	chr13:79952400-79962200	Weak transcription	Psoas Muscle	Psoas
26	chr13:79952400-79963000	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr13:79952400-79963600	Weak transcription	Rectal Smooth Muscle	rectum
28	chr13:79952400-79966800	Weak transcription	Thymus	Thymus
29	chr13:79952400-79967000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr13:79952400-79967200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr13:79952400-79967200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr13:79952400-79967200	Weak transcription	Fetal Lung	lung
33	chr13:79952400-79967400	Weak transcription	Fetal Brain Female	brain
34	chr13:79952400-79967600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr13:79952400-79967600	Weak transcription	Left Ventricle	heart
36	chr13:79952400-79967600	Weak transcription	Right Ventricle	heart
37	chr13:79952400-79967800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr13:79952600-79966800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr13:79952600-79977800	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr13:79952800-79960000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr13:79952800-79966800	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr13:79952800-79966800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr13:79952800-79967200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr13:79952800-79967200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr13:79952800-79967800	Weak transcription	Fetal Stomach	stomach
46	chr13:79953000-79961400	Weak transcription	Liver	Liver
47	chr13:79953000-79967200	Weak transcription	Fetal Muscle Trunk	muscle
48	chr13:79953000-79967200	Weak transcription	Fetal Muscle Leg	muscle
49	chr13:79953000-79967400	Weak transcription	Placenta	Placenta
50	chr13:79953200-79958000	Weak transcription	Fetal Thymus	thymus

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