Variant report

Variant	rs11843203
Chromosome Location	chr13:80000283-80000284
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:79988180..79990725-chr13:79998257..80000787,2	MCF-7	breast:
2	chr13:79991045..79992865-chr13:79998283..80000487,2	K562	blood:
3	chr13:79998349..80000455-chr13:80001277..80003996,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NDFIP2-2	chr13:79997687-80001485	XLOC_010445
2	lnc-NDFIP2-2	chr13:79999498-80001488	NONHSAT034486

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1018633	0.85[GIH][hapmap];1.00[TSI][hapmap]
rs11838700	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11838897	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11839689	1.00[EUR][1000 genomes]
rs11840407	1.00[EUR][1000 genomes]
rs11841482	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11841756	1.00[AMR][1000 genomes]
rs11841968	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11843917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11843939	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1410334	1.00[ASN][1000 genomes]
rs1410335	1.00[ASN][1000 genomes]
rs17071316	1.00[ASN][1000 genomes]
rs17071492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17071589	1.00[AMR][1000 genomes]
rs17071629	0.86[ASW][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs35724140	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41305026	1.00[ASN][1000 genomes]
rs41364649	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55820419	1.00[EUR][1000 genomes]
rs56863569	1.00[EUR][1000 genomes]
rs58043862	1.00[ASN][1000 genomes]
rs58233612	1.00[EUR][1000 genomes]
rs59251364	1.00[EUR][1000 genomes]
rs60016606	1.00[EUR][1000 genomes]
rs6563111	0.85[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7337908	0.85[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7338662	1.00[EUR][1000 genomes]
rs73548905	1.00[EUR][1000 genomes]
rs73548913	1.00[EUR][1000 genomes]
rs73548931	1.00[EUR][1000 genomes]
rs73548932	1.00[EUR][1000 genomes]
rs73548936	1.00[EUR][1000 genomes]
rs73548939	1.00[EUR][1000 genomes]
rs73548952	1.00[EUR][1000 genomes]
rs73548962	1.00[EUR][1000 genomes]
rs73548974	1.00[EUR][1000 genomes]
rs73551514	1.00[EUR][1000 genomes]
rs73551516	1.00[EUR][1000 genomes]
rs73560567	1.00[ASN][1000 genomes]
rs74098308	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74098315	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74098399	1.00[EUR][1000 genomes]
rs7985239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7985291	1.00[AMR][1000 genomes]
rs7994370	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7995350	1.00[EUR][1000 genomes]
rs7995408	1.00[EUR][1000 genomes]
rs7996153	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8002638	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832657	chr13:79904978-80099108	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv523979	chr13:79979679-80120263	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79980800-80007200	Weak transcription	Spleen	Spleen
2	chr13:79981000-80007200	Weak transcription	Aorta	Aorta
3	chr13:79981200-80010200	Weak transcription	Right Ventricle	heart
4	chr13:79981800-80001600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:79982600-80006400	Weak transcription	Gastric	stomach
6	chr13:79983600-80003400	Weak transcription	GM12878-XiMat	blood
7	chr13:79987800-80001400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr13:79998000-80002000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr13:79998800-80006000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr13:79999200-80001400	Weak transcription	Dnd41	blood

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