Variant report

Variant	rs41305026
Chromosome Location	chr13:79951003-79951004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:79949599..79952196-chr13:79952823..79955805,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11838897	1.00[ASN][1000 genomes]
rs11841482	1.00[ASN][1000 genomes]
rs11841968	1.00[ASN][1000 genomes]
rs11843203	1.00[ASN][1000 genomes]
rs1335372	0.86[EUR][1000 genomes]
rs1410334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1410335	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17071316	1.00[ASN][1000 genomes]
rs35724140	1.00[ASN][1000 genomes]
rs41364649	1.00[ASN][1000 genomes]
rs58043862	1.00[ASN][1000 genomes]
rs58264675	0.86[EUR][1000 genomes]
rs7139902	0.86[EUR][1000 genomes]
rs7318984	0.82[EUR][1000 genomes]
rs7325970	0.82[EUR][1000 genomes]
rs73548948	0.86[EUR][1000 genomes]
rs73560567	1.00[ASN][1000 genomes]
rs73564681	0.85[EUR][1000 genomes]
rs7983312	0.82[EUR][1000 genomes]
rs7994370	1.00[ASN][1000 genomes]
rs7995717	0.82[EUR][1000 genomes]
rs7996153	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900586	chr13:79892722-79968467	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv900587	chr13:79894736-79956691	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv832657	chr13:79904978-80099108	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79893200-79957800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:79941800-79956600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr13:79942000-79967400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:79943000-79957800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr13:79946000-79960000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr13:79946400-79969200	Weak transcription	Fetal Kidney	kidney
7	chr13:79946800-79954600	Weak transcription	Colonic Mucosa	Colon
8	chr13:79947800-79952400	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr13:79947800-79952600	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr13:79947800-79952600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr13:79947800-79952600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr13:79947800-79952800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr13:79947800-79953200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr13:79947800-79953200	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr13:79947800-79953400	Strong transcription	GM12878-XiMat	blood
16	chr13:79947800-79953600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr13:79947800-79953600	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr13:79947800-79954200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr13:79947800-79954400	Strong transcription	Primary B cells from peripheral blood	blood
20	chr13:79947800-79955600	Strong transcription	Dnd41	blood
21	chr13:79948000-79951800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr13:79948000-79952200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr13:79948000-79952400	Strong transcription	Duodenum Mucosa	Duodenum
24	chr13:79948000-79952400	Strong transcription	Duodenum Smooth Muscle	Duodenum
25	chr13:79948000-79952400	Strong transcription	Fetal Lung	lung
26	chr13:79948000-79952400	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr13:79948000-79952400	Strong transcription	Skeletal Muscle Male	skeletal muscle
28	chr13:79948000-79952400	Strong transcription	Skeletal Muscle Female	skeletal muscle
29	chr13:79948000-79952400	Strong transcription	Osteobl	bone
30	chr13:79948000-79952600	Strong transcription	Primary T cells from cord blood	blood
31	chr13:79948000-79952600	Strong transcription	Primary hematopoietic stem cells	blood
32	chr13:79948000-79952600	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr13:79948000-79952800	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr13:79948000-79952800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr13:79948000-79953000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
36	chr13:79948000-79953000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr13:79948000-79953200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr13:79948000-79953200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr13:79948000-79953200	Strong transcription	Fetal Thymus	thymus
40	chr13:79948000-79953200	Strong transcription	HSMM	muscle
41	chr13:79948000-79953400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr13:79948000-79954400	Strong transcription	Primary B cells from cord blood	blood
43	chr13:79948200-79951600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr13:79948200-79952400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr13:79948200-79952400	Strong transcription	Fetal Brain Female	brain
46	chr13:79948200-79952400	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr13:79948200-79952800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr13:79948200-79952800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr13:79948200-79952800	Strong transcription	Fetal Stomach	stomach
50	chr13:79948200-79953000	Strong transcription	Liver	Liver

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