Variant report

Variant	rs73564681
Chromosome Location	chr13:79949790-79949791
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:79949599..79952196-chr13:79952823..79955805,2	MCF-7	breast:
2	chr13:79940489..79942669-chr13:79947874..79950241,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139746	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17071385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17071415	0.92[EUR][1000 genomes]
rs41305026	0.85[EUR][1000 genomes]
rs57544957	0.92[EUR][1000 genomes]
rs59773478	0.92[EUR][1000 genomes]
rs6563107	0.92[EUR][1000 genomes]
rs7318984	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7329633	0.80[EUR][1000 genomes]
rs7330804	0.80[EUR][1000 genomes]
rs73566422	0.92[EUR][1000 genomes]
rs73566424	0.92[EUR][1000 genomes]
rs73566435	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73566454	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73566469	0.87[EUR][1000 genomes]
rs7992181	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900586	chr13:79892722-79968467	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv900587	chr13:79894736-79956691	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv832657	chr13:79904978-80099108	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79886600-79950200	Weak transcription	Fetal Brain Male	brain
2	chr13:79893200-79957800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:79894400-79950200	Weak transcription	Stomach Mucosa	stomach
4	chr13:79923000-79950600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr13:79941200-79950200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr13:79941200-79951000	Weak transcription	Aorta	Aorta
7	chr13:79941800-79956600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr13:79942000-79950200	Weak transcription	Small Intestine	intestine
9	chr13:79942000-79950400	Weak transcription	Gastric	stomach
10	chr13:79942000-79967400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:79942400-79950600	Weak transcription	Pancreas	Pancrea
12	chr13:79943000-79957800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr13:79944400-79950400	Weak transcription	Spleen	Spleen
14	chr13:79944400-79951000	Weak transcription	Esophagus	oesophagus
15	chr13:79944800-79950200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr13:79944800-79950200	Weak transcription	Brain Angular Gyrus	brain
17	chr13:79945200-79950400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr13:79945400-79950600	Weak transcription	Brain Substantia Nigra	brain
19	chr13:79946000-79950000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr13:79946000-79950000	Weak transcription	Colon Smooth Muscle	Colon
21	chr13:79946000-79960000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr13:79946200-79950000	Weak transcription	HMEC	breast
23	chr13:79946200-79950000	Weak transcription	HSMMtube	muscle
24	chr13:79946400-79950000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr13:79946400-79950000	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr13:79946400-79950200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr13:79946400-79950200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr13:79946400-79950200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr13:79946400-79950200	Weak transcription	Ovary	ovary
30	chr13:79946400-79950200	Weak transcription	Rectal Smooth Muscle	rectum
31	chr13:79946400-79950400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr13:79946400-79950400	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr13:79946400-79950800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr13:79946400-79969200	Weak transcription	Fetal Kidney	kidney
35	chr13:79946800-79950400	Weak transcription	NHEK	skin
36	chr13:79946800-79954600	Weak transcription	Colonic Mucosa	Colon
37	chr13:79947800-79950400	Strong transcription	Fetal Intestine Large	intestine
38	chr13:79947800-79952400	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr13:79947800-79952600	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr13:79947800-79952600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr13:79947800-79952600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr13:79947800-79952800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr13:79947800-79953200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr13:79947800-79953200	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr13:79947800-79953400	Strong transcription	GM12878-XiMat	blood
46	chr13:79947800-79953600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr13:79947800-79953600	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr13:79947800-79954200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr13:79947800-79954400	Strong transcription	Primary B cells from peripheral blood	blood
50	chr13:79947800-79955600	Strong transcription	Dnd41	blood

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