Variant report

Variant	rs73566469
Chromosome Location	chr13:80007472-80007473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1408655	1.00[ASN][1000 genomes]
rs1410334	0.82[EUR][1000 genomes]
rs1410335	0.82[EUR][1000 genomes]
rs1555731	1.00[ASN][1000 genomes]
rs1590466	1.00[ASN][1000 genomes]
rs17071385	0.96[EUR][1000 genomes]
rs17071415	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs17071549	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1980882	1.00[ASN][1000 genomes]
rs2765081	1.00[ASN][1000 genomes]
rs3861140	1.00[ASN][1000 genomes]
rs4052508	1.00[ASN][1000 genomes]
rs4884128	1.00[ASN][1000 genomes]
rs57544957	0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs57929179	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs58056613	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs59773478	0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs60194813	1.00[AMR][1000 genomes]
rs61151618	1.00[AMR][1000 genomes]
rs61318325	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6563101	1.00[ASN][1000 genomes]
rs6563103	1.00[ASN][1000 genomes]
rs6563106	1.00[ASN][1000 genomes]
rs6563107	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6563108	1.00[ASN][1000 genomes]
rs7318984	0.92[EUR][1000 genomes]
rs7325232	1.00[ASN][1000 genomes]
rs7326625	1.00[ASN][1000 genomes]
rs7329633	0.84[EUR][1000 genomes]
rs7330804	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7331979	0.85[AMR][1000 genomes]
rs7333651	1.00[ASN][1000 genomes]
rs7334978	1.00[ASN][1000 genomes]
rs7335191	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73553418	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73553448	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73555409	0.87[AMR][1000 genomes]
rs73564681	0.87[EUR][1000 genomes]
rs73566422	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs73566424	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs73566435	0.96[EUR][1000 genomes]
rs73566454	0.96[EUR][1000 genomes]
rs7992181	0.96[EUR][1000 genomes]
rs7997554	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs8001089	1.00[ASN][1000 genomes]
rs9318630	1.00[ASN][1000 genomes]
rs9318631	1.00[ASN][1000 genomes]
rs9318637	1.00[ASN][1000 genomes]
rs9530903	1.00[ASN][1000 genomes]
rs9545096	1.00[ASN][1000 genomes]
rs9545102	1.00[ASN][1000 genomes]
rs9545105	1.00[ASN][1000 genomes]
rs9545107	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832657	chr13:79904978-80099108	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv523979	chr13:79979679-80120263	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79981200-80010200	Weak transcription	Right Ventricle	heart
2	chr13:80001800-80009000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr13:80003200-80009200	Weak transcription	Fetal Heart	heart
4	chr13:80006400-80009000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr13:80007400-80009800	Weak transcription	Fetal Intestine Small	intestine

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