Variant report

Variant	rs3861140
Chromosome Location	chr13:79816916-79816917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1328046	0.98[EUR][1000 genomes]
rs1408655	1.00[ASN][1000 genomes]
rs1536655	0.92[EUR][1000 genomes]
rs1555731	1.00[ASN][1000 genomes]
rs1590466	1.00[ASN][1000 genomes]
rs1980882	1.00[ASN][1000 genomes]
rs2149125	1.00[EUR][1000 genomes]
rs2149126	0.92[EUR][1000 genomes]
rs2765081	1.00[ASN][1000 genomes]
rs3949834	0.98[EUR][1000 genomes]
rs4052508	1.00[ASN][1000 genomes]
rs4884128	1.00[ASN][1000 genomes]
rs4885618	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57210353	0.94[EUR][1000 genomes]
rs60461444	0.85[EUR][1000 genomes]
rs6563091	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6563101	1.00[ASN][1000 genomes]
rs6563103	1.00[ASN][1000 genomes]
rs6563106	1.00[ASN][1000 genomes]
rs6563108	1.00[ASN][1000 genomes]
rs7322427	1.00[EUR][1000 genomes]
rs7322615	0.98[EUR][1000 genomes]
rs7325232	1.00[ASN][1000 genomes]
rs7326625	1.00[ASN][1000 genomes]
rs7333651	1.00[ASN][1000 genomes]
rs7334978	1.00[ASN][1000 genomes]
rs7339418	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73557929	1.00[EUR][1000 genomes]
rs73566469	1.00[ASN][1000 genomes]
rs8001089	1.00[ASN][1000 genomes]
rs9285308	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9318630	1.00[ASN][1000 genomes]
rs9318631	1.00[ASN][1000 genomes]
rs9318637	1.00[ASN][1000 genomes]
rs9530879	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9530883	0.98[EUR][1000 genomes]
rs9530903	1.00[ASN][1000 genomes]
rs9545039	0.98[EUR][1000 genomes]
rs9545096	1.00[ASN][1000 genomes]
rs9545102	1.00[ASN][1000 genomes]
rs9545105	1.00[ASN][1000 genomes]
rs9545107	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916612	chr13:79669876-79820692	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79804400-79817200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr13:79815000-79817800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:79816200-79817200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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