Variant report

Variant	rs7339418
Chromosome Location	chr13:79820126-79820127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1328046	0.98[EUR][1000 genomes]
rs1536655	0.92[EUR][1000 genomes]
rs2149125	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2149126	0.92[EUR][1000 genomes]
rs3861140	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3949834	0.98[EUR][1000 genomes]
rs4885618	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57210353	0.94[EUR][1000 genomes]
rs60461444	0.85[EUR][1000 genomes]
rs6563091	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7322427	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7322615	0.98[EUR][1000 genomes]
rs73557929	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9285308	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9530879	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9530883	0.98[EUR][1000 genomes]
rs9545039	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916612	chr13:79669876-79820692	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv523536	chr13:79820126-79824974	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79817600-79820200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr13:79817600-79824400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr13:79819800-79820600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:79819800-79821000	Enhancers	GM12878-XiMat	blood
5	chr13:79820000-79821000	Enhancers	Primary B cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links