Variant report

Variant	rs2149125
Chromosome Location	chr13:79845474-79845475
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1328046	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1536655	0.92[EUR][1000 genomes]
rs2149126	0.92[EUR][1000 genomes]
rs3861140	1.00[EUR][1000 genomes]
rs3949834	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4885618	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57210353	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60461444	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6563091	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7322427	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7322615	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7339418	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73557929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9285308	0.96[EUR][1000 genomes]
rs9530879	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9530883	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9545039	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79843000-79845800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr13:79843600-79846000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr13:79843600-79846200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr13:79843600-79846200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr13:79844400-79845800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:79844400-79845800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr13:79844600-79846200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr13:79844800-79846000	Enhancers	HepG2	liver
9	chr13:79845200-79846200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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