Variant report

Variant	rs9285308
Chromosome Location	chr13:79813989-79813990
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1324872	1.00[ASN][1000 genomes]
rs1328045	1.00[ASN][1000 genomes]
rs1328046	0.94[EUR][1000 genomes]
rs1410331	1.00[ASN][1000 genomes]
rs1536655	0.88[EUR][1000 genomes]
rs1571322	1.00[ASN][1000 genomes]
rs1856995	1.00[ASN][1000 genomes]
rs2149125	0.96[EUR][1000 genomes]
rs2149126	0.88[EUR][1000 genomes]
rs3861140	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3949834	0.94[EUR][1000 genomes]
rs4885618	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57210353	0.89[EUR][1000 genomes]
rs60461444	0.81[EUR][1000 genomes]
rs6563091	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7322427	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7322615	0.94[EUR][1000 genomes]
rs7324585	1.00[ASN][1000 genomes]
rs7327629	1.00[ASN][1000 genomes]
rs7334029	1.00[ASN][1000 genomes]
rs7339418	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73557929	0.96[EUR][1000 genomes]
rs7993115	1.00[ASN][1000 genomes]
rs927696	1.00[ASN][1000 genomes]
rs9530879	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9530883	0.94[EUR][1000 genomes]
rs9545039	0.94[EUR][1000 genomes]
rs9545056	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916612	chr13:79669876-79820692	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79804400-79817200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr13:79813200-79816200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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