Variant report

Variant	rs7334029
Chromosome Location	chr13:79855866-79855867
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1324872	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1328043	0.89[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1328044	0.90[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1328045	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1359411	0.90[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1408655	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1410330	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1410331	0.90[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1410333	0.90[YRI][hapmap];0.93[AFR][1000 genomes]
rs1555731	1.00[AMR][1000 genomes]
rs1571322	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1590466	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1749987	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1752645	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1853721	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1856995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1980882	0.90[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2147567	1.00[AMR][1000 genomes]
rs2265032	1.00[AMR][1000 genomes]
rs2765081	1.00[AMR][1000 genomes]
rs2991462	1.00[AMR][1000 genomes]
rs314691	1.00[AMR][1000 genomes]
rs314696	1.00[AMR][1000 genomes]
rs314697	1.00[AMR][1000 genomes]
rs314698	1.00[AMR][1000 genomes]
rs314699	1.00[AMR][1000 genomes]
rs4052508	1.00[AMR][1000 genomes]
rs418177	1.00[AMR][1000 genomes]
rs4300513	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs450755	1.00[AMR][1000 genomes]
rs4884128	0.89[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4885630	1.00[AMR][1000 genomes]
rs592096	1.00[AMR][1000 genomes]
rs6563092	1.00[AMR][1000 genomes]
rs6563099	0.90[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6563101	1.00[AMR][1000 genomes]
rs6563102	1.00[AMR][1000 genomes]
rs6563103	0.90[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6563106	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6563108	0.90[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs660872	1.00[AMR][1000 genomes]
rs674280	1.00[AMR][1000 genomes]
rs7324585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7325232	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7327629	1.00[ASN][1000 genomes]
rs7333101	0.90[YRI][hapmap]
rs7333651	0.90[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7983606	0.89[YRI][hapmap]
rs7993115	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7993478	0.90[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7994560	0.89[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7996740	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7996869	1.00[AMR][1000 genomes]
rs7998224	1.00[AMR][1000 genomes]
rs8001089	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs8001822	1.00[AMR][1000 genomes]
rs927696	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9285308	1.00[ASN][1000 genomes]
rs9318630	0.90[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9318631	0.90[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9318637	0.89[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9530903	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9545056	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9545084	0.90[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9545096	0.90[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9545102	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9545105	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9545107	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9545111	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9601212	0.90[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9601234	1.00[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79854000-79857600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr13:79854000-79857600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr13:79854000-79858000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr13:79854000-79858200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:79854200-79856400	Enhancers	H9 Cell Line	embryonic stem cell
6	chr13:79854200-79856400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:79854200-79856800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr13:79854200-79858000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr13:79854400-79856600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr13:79854400-79857200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr13:79854600-79858800	Weak transcription	Pancreas	Pancrea
12	chr13:79854600-79862000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr13:79855000-79856400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr13:79855200-79856000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:79855200-79856400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr13:79855400-79856200	Enhancers	Brain Germinal Matrix	brain
17	chr13:79855400-79857000	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr13:79855600-79856000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr13:79855600-79856200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr13:79855600-79856400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr13:79855800-79856000	Genic enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr13:79855800-79856200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr13:79855800-79856200	Enhancers	Hela-S3	cervix
24	chr13:79855800-79856800	Enhancers	Liver	Liver
25	chr13:79855800-79857200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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