Variant report

Variant	rs9545102
Chromosome Location	chr13:79975380-79975381
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:79966275..79969690-chr13:79971723..79976630,6	K562	blood:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1324872	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1328043	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1328044	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1328045	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1335376	1.00[AMR][1000 genomes]
rs1359411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1408655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1410330	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1410331	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1410333	0.90[AFR][1000 genomes]
rs1555731	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1571322	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1590466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1749987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1752645	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1853721	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1856995	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1885817	1.00[AMR][1000 genomes]
rs1980882	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2147567	1.00[AMR][1000 genomes]
rs2208944	1.00[AMR][1000 genomes]
rs2265032	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2484341	1.00[AMR][1000 genomes]
rs2484342	1.00[AMR][1000 genomes]
rs2760109	1.00[AMR][1000 genomes]
rs2760110	1.00[AMR][1000 genomes]
rs2765081	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2783128	1.00[AMR][1000 genomes]
rs2991462	1.00[AMR][1000 genomes]
rs314691	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs314696	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs314697	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs314698	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs314699	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3861140	1.00[ASN][1000 genomes]
rs4052508	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs418177	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4300513	1.00[AMR][1000 genomes]
rs450755	1.00[AMR][1000 genomes]
rs4884128	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4885630	1.00[AMR][1000 genomes]
rs4885648	1.00[AMR][1000 genomes]
rs6563092	1.00[AMR][1000 genomes]
rs6563099	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6563101	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6563102	1.00[AMR][1000 genomes]
rs6563103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6563106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6563108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6563118	1.00[AMR][1000 genomes]
rs7324585	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7325232	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7326625	1.00[ASN][1000 genomes]
rs7333651	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7334029	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7334978	1.00[ASN][1000 genomes]
rs73566469	1.00[ASN][1000 genomes]
rs7993115	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7993478	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7994560	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7996740	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7996869	1.00[AMR][1000 genomes]
rs7998224	1.00[AMR][1000 genomes]
rs8001089	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8001822	1.00[AMR][1000 genomes]
rs927696	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9318630	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9318631	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9318637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9530903	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9545056	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9545084	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9545096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9545105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9545107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9545111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9601212	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832657	chr13:79904978-80099108	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79951200-79979200	Weak transcription	Esophagus	oesophagus
2	chr13:79951800-79978200	Weak transcription	Aorta	Aorta
3	chr13:79952600-79977800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr13:79958800-79977800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr13:79960600-79975600	Weak transcription	Ovary	ovary
6	chr13:79968000-79975800	Weak transcription	HMEC	breast
7	chr13:79968000-79976600	Weak transcription	Right Ventricle	heart
8	chr13:79968000-79977800	Weak transcription	Gastric	stomach
9	chr13:79968200-79975600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr13:79968400-79975800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr13:79968400-79977200	Weak transcription	Right Atrium	heart
12	chr13:79968400-79979200	Weak transcription	Lung	lung
13	chr13:79968600-79975600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr13:79968600-79976600	Weak transcription	Colon Smooth Muscle	Colon
15	chr13:79968600-79977800	Weak transcription	Spleen	Spleen
16	chr13:79968600-79978600	Weak transcription	Placenta	Placenta
17	chr13:79968600-79978600	Weak transcription	Pancreas	Pancrea
18	chr13:79968600-79979200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr13:79969000-79976000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr13:79969200-79975400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr13:79969200-79975600	Weak transcription	Psoas Muscle	Psoas
22	chr13:79969200-79975600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr13:79969200-79975800	Strong transcription	Fetal Thymus	thymus
24	chr13:79969200-79977800	Weak transcription	Left Ventricle	heart
25	chr13:79969600-79977200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr13:79970200-79976600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr13:79970400-79975600	Weak transcription	Thymus	Thymus
28	chr13:79970400-79977200	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr13:79970400-79977800	Weak transcription	HSMMtube	muscle
30	chr13:79970800-79975600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
31	chr13:79971000-79976800	Weak transcription	NH-A	brain
32	chr13:79971200-79975600	Weak transcription	Fetal Brain Female	brain
33	chr13:79971400-79975600	Weak transcription	Brain Germinal Matrix	brain
34	chr13:79971400-79979200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr13:79971600-79975400	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr13:79971600-79975600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr13:79971600-79976600	Weak transcription	Fetal Lung	lung
38	chr13:79971600-79977400	Weak transcription	Fetal Kidney	kidney
39	chr13:79971600-79978800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr13:79971800-79975400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr13:79971800-79975600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr13:79971800-79975600	Weak transcription	Fetal Intestine Small	intestine
43	chr13:79971800-79976200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr13:79971800-79976400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr13:79971800-79976600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr13:79971800-79976600	Weak transcription	NHLF	lung
47	chr13:79971800-79976800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr13:79971800-79977400	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr13:79971800-79977400	Weak transcription	Fetal Stomach	stomach
50	chr13:79971800-79977800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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