Variant report

Variant	rs2991462
Chromosome Location	chr13:79784533-79784534
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1324872	1.00[AMR][1000 genomes]
rs1328043	1.00[AMR][1000 genomes]
rs1328044	1.00[AMR][1000 genomes]
rs1328045	1.00[AMR][1000 genomes]
rs1408655	1.00[AMR][1000 genomes]
rs1410330	1.00[AMR][1000 genomes]
rs1410331	1.00[AMR][1000 genomes]
rs1555731	1.00[AMR][1000 genomes]
rs1571322	1.00[AMR][1000 genomes]
rs1590466	1.00[AMR][1000 genomes]
rs1752645	1.00[AMR][1000 genomes]
rs1755463	1.00[AFR][1000 genomes]
rs1853721	1.00[AMR][1000 genomes]
rs1856995	1.00[AMR][1000 genomes]
rs1980882	1.00[AMR][1000 genomes]
rs2765081	1.00[AMR][1000 genomes]
rs2988041	1.00[AFR][1000 genomes]
rs2988043	1.00[AFR][1000 genomes]
rs2988047	1.00[AFR][1000 genomes]
rs2991508	1.00[EUR][1000 genomes]
rs4052508	1.00[AMR][1000 genomes]
rs4300513	1.00[AMR][1000 genomes]
rs4884128	1.00[AMR][1000 genomes]
rs4885630	1.00[AMR][1000 genomes]
rs588755	1.00[AFR][1000 genomes]
rs592096	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs597726	1.00[AFR][1000 genomes]
rs645414	1.00[EUR][1000 genomes]
rs6563092	1.00[AMR][1000 genomes]
rs6563099	1.00[AMR][1000 genomes]
rs6563101	1.00[AMR][1000 genomes]
rs6563102	1.00[AMR][1000 genomes]
rs6563103	1.00[AMR][1000 genomes]
rs6563106	1.00[AMR][1000 genomes]
rs6563108	1.00[AMR][1000 genomes]
rs660872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs662380	1.00[AFR][1000 genomes]
rs674280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs676238	1.00[EUR][1000 genomes]
rs680178	1.00[AFR][1000 genomes]
rs686483	1.00[EUR][1000 genomes]
rs7324585	1.00[AMR][1000 genomes]
rs7325232	1.00[AMR][1000 genomes]
rs7333651	1.00[AMR][1000 genomes]
rs7334029	1.00[AMR][1000 genomes]
rs7993115	1.00[AMR][1000 genomes]
rs7993478	1.00[AMR][1000 genomes]
rs7994560	1.00[AMR][1000 genomes]
rs7996740	1.00[AMR][1000 genomes]
rs7996869	1.00[AMR][1000 genomes]
rs7998224	1.00[AMR][1000 genomes]
rs8001089	1.00[AMR][1000 genomes]
rs8001822	1.00[AMR][1000 genomes]
rs927696	1.00[AMR][1000 genomes]
rs9318630	1.00[AMR][1000 genomes]
rs9318631	1.00[AMR][1000 genomes]
rs9318637	1.00[AMR][1000 genomes]
rs9530903	1.00[AMR][1000 genomes]
rs9545056	1.00[AMR][1000 genomes]
rs9545084	1.00[AMR][1000 genomes]
rs9545096	1.00[AMR][1000 genomes]
rs9545102	1.00[AMR][1000 genomes]
rs9545105	1.00[AMR][1000 genomes]
rs9545107	1.00[AMR][1000 genomes]
rs9601212	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916612	chr13:79669876-79820692	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1045334	chr13:79671094-79809717	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79769600-79786600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:79775200-79788200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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