Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1755463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2988036	0.92[EUR][1000 genomes]
rs2988037	0.92[EUR][1000 genomes]
rs2988038	0.92[EUR][1000 genomes]
rs2988040	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2988041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2988042	0.92[EUR][1000 genomes]
rs2988043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2988045	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2988046	0.92[EUR][1000 genomes]
rs2988047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2991444	0.92[EUR][1000 genomes]
rs2991445	0.92[EUR][1000 genomes]
rs2991462	1.00[AFR][1000 genomes]
rs588755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs660872	1.00[AFR][1000 genomes]
rs662378	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs662380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs671700	0.92[EUR][1000 genomes]
rs674280	1.00[AFR][1000 genomes]
rs680178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916612	chr13:79669876-79820692	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1045334	chr13:79671094-79809717	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79757800-79775000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:79769600-79786600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:79771400-79773400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr13:79771600-79773400	Enhancers	HUES64 Cell Line	embryonic stem cell

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