Variant report
| Variant | rs674280 |
|---|---|
| Chromosome Location | chr13:79701674-79701675 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1324872 | 1.00[AMR][1000 genomes] |
| rs1328045 | 1.00[AMR][1000 genomes] |
| rs1571322 | 1.00[AMR][1000 genomes] |
| rs1755463 | 1.00[AFR][1000 genomes] |
| rs1853721 | 1.00[AMR][1000 genomes] |
| rs1856995 | 1.00[AMR][1000 genomes] |
| rs2988041 | 1.00[AFR][1000 genomes] |
| rs2988043 | 1.00[AFR][1000 genomes] |
| rs2988047 | 1.00[AFR][1000 genomes] |
| rs2991462 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2991508 | 1.00[EUR][1000 genomes] |
| rs4052508 | 1.00[AMR][1000 genomes] |
| rs4300513 | 1.00[AMR][1000 genomes] |
| rs4885630 | 1.00[AMR][1000 genomes] |
| rs588755 | 1.00[AFR][1000 genomes] |
| rs592096 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs597726 | 1.00[AFR][1000 genomes] |
| rs645414 | 1.00[EUR][1000 genomes] |
| rs6563092 | 1.00[AMR][1000 genomes] |
| rs660872 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs662380 | 1.00[AFR][1000 genomes] |
| rs676238 | 1.00[EUR][1000 genomes] |
| rs680178 | 1.00[AFR][1000 genomes] |
| rs686483 | 1.00[EUR][1000 genomes] |
| rs7324585 | 1.00[AMR][1000 genomes] |
| rs7334029 | 1.00[AMR][1000 genomes] |
| rs7993115 | 1.00[AMR][1000 genomes] |
| rs927696 | 1.00[AMR][1000 genomes] |
| rs9545056 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916612 | chr13:79669876-79820692 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv1045334 | chr13:79671094-79809717 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1046915 | chr13:79695827-79756956 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionCpG islandlncRNA | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:79700400-79702800 | Enhancers | HMEC | breast |
| 2 | chr13:79701000-79702200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
