The 2.0 version of rSNPBase

Variant report

Variant rs2484342
Chromosome Location chr13:80102146-80102147
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:96 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:80066800-80122800 Weak transcription Esophagus oesophagus
2 chr13:80082800-80108000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
3 chr13:80083000-80120000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr13:80083000-80122800 Weak transcription Stomach Mucosa stomach
5 chr13:80087400-80134000 Weak transcription Aorta Aorta
6 chr13:80087400-80134600 Weak transcription Pancreas Pancrea
7 chr13:80089400-80118400 Weak transcription Small Intestine intestine
8 chr13:80090600-80112000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr13:80090800-80103400 Weak transcription iPS-20b Cell Line embryonic stem cell
10 chr13:80091400-80108000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
11 chr13:80092200-80109400 Weak transcription Pancreatic Islets Pancreatic Islet
12 chr13:80093000-80110200 Weak transcription Cortex derived primary cultured neurospheres brain
13 chr13:80093400-80104200 Weak transcription ES-WA7 Cell Line embryonic stem cell
14 chr13:80093400-80112800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
15 chr13:80093600-80108200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
16 chr13:80093800-80104400 Weak transcription H9 Cell Line embryonic stem cell
17 chr13:80093800-80109800 Weak transcription H1 Cell Line embryonic stem cell
18 chr13:80095000-80102800 Strong transcription Rectal Mucosa Donor 29 rectum
19 chr13:80095600-80102400 Strong transcription Fetal Intestine Large intestine
20 chr13:80095600-80104200 Weak transcription Fetal Brain Female brain
21 chr13:80095600-80108000 Weak transcription NHDF-Ad bronchial
22 chr13:80095600-80109000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
23 chr13:80095600-80109000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
24 chr13:80097000-80102800 Weak transcription Fetal Stomach stomach
25 chr13:80097000-80108000 Weak transcription HUES6 Cell Line embryonic stem cell
26 chr13:80097000-80109200 Weak transcription Primary T cells fromperipheralblood blood
27 chr13:80097000-80110400 Weak transcription Primary T helper cells fromperipheralblood blood
28 chr13:80097000-80112400 Weak transcription Thymus Thymus
29 chr13:80097200-80104400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
30 chr13:80097200-80104600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
31 chr13:80097200-80108600 Weak transcription HSMMtube muscle
32 chr13:80097200-80112400 Weak transcription Rectal Smooth Muscle rectum
33 chr13:80097200-80122800 Weak transcription Fetal Lung lung
34 chr13:80097400-80106600 Genic enhancers Dnd41 blood
35 chr13:80097400-80108600 Weak transcription Primary T regulatory cells fromperipheralblood blood
36 chr13:80097400-80121800 Weak transcription Lung lung
37 chr13:80097800-80110800 Weak transcription Fetal Intestine Small intestine
38 chr13:80098000-80102400 Enhancers Fetal Adrenal Gland Adrenal Gland
39 chr13:80098000-80102400 Genic enhancers NHEK skin
40 chr13:80098000-80112600 Weak transcription Stomach Smooth Muscle stomach
41 chr13:80098200-80111000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr13:80098400-80114200 Weak transcription Placenta Amnion Placenta Amnion
43 chr13:80098400-80123200 Weak transcription Fetal Kidney kidney
44 chr13:80098600-80107800 Weak transcription HUES64 Cell Line embryonic stem cell
45 chr13:80098600-80108200 Weak transcription Ovary ovary
46 chr13:80098600-80135000 Weak transcription Placenta Placenta
47 chr13:80098800-80109800 Weak transcription Skeletal Muscle Female skeletal muscle
48 chr13:80099000-80103000 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr13:80099000-80103200 Enhancers Fetal Heart heart
50 chr13:80099200-80104200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015