Variant report

Variant	rs2802635
Chromosome Location	chr13:80306278-80306279
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1335278	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1335283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1335376	1.00[AMR][1000 genomes]
rs1414112	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1591415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1885817	1.00[AMR][1000 genomes]
rs1953338	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2027150	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2146589	1.00[AMR][1000 genomes]
rs2146591	1.00[AMR][1000 genomes]
rs2208939	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2208940	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2208941	1.00[AMR][1000 genomes]
rs2208944	1.00[AMR][1000 genomes]
rs2224691	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2484341	1.00[AMR][1000 genomes]
rs2484342	1.00[AMR][1000 genomes]
rs2760109	1.00[AMR][1000 genomes]
rs2760110	1.00[AMR][1000 genomes]
rs2783091	1.00[AMR][1000 genomes]
rs2783128	1.00[AMR][1000 genomes]
rs4885648	1.00[AMR][1000 genomes]
rs4885654	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6563118	1.00[AMR][1000 genomes]
rs6563126	1.00[AMR][1000 genomes]
rs7332248	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900588	chr13:80216846-80421340	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv900589	chr13:80250511-80310295	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1039333	chr13:80289936-80333167	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80299400-80310000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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