Variant report

Variant	rs1335278
Chromosome Location	chr13:80340001-80340002
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1335283	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1335376	1.00[AMR][1000 genomes]
rs1414112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1591415	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1885817	1.00[AMR][1000 genomes]
rs1953338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2027150	1.00[AMR][1000 genomes]
rs2146589	1.00[AMR][1000 genomes]
rs2146591	1.00[AMR][1000 genomes]
rs2208939	1.00[AMR][1000 genomes]
rs2208940	1.00[AMR][1000 genomes]
rs2208941	1.00[AMR][1000 genomes]
rs2208944	1.00[AMR][1000 genomes]
rs2224691	1.00[AMR][1000 genomes]
rs2760109	1.00[AMR][1000 genomes]
rs2760110	1.00[AMR][1000 genomes]
rs2783091	1.00[AMR][1000 genomes]
rs2783128	1.00[AMR][1000 genomes]
rs2802635	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4885648	1.00[AMR][1000 genomes]
rs4885654	1.00[AMR][1000 genomes]
rs6563118	1.00[AMR][1000 genomes]
rs6563126	1.00[AMR][1000 genomes]
rs7332248	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900588	chr13:80216846-80421340	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80325000-80341400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:80338400-80341200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:80339800-80340200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:80340000-80340400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr13:80340000-80340800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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