Variant report

Variant	rs314697
Chromosome Location	chr13:80005878-80005879
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1324872	1.00[AMR][1000 genomes]
rs1328043	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1328044	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1328045	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1335376	1.00[AMR][1000 genomes]
rs1359411	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1408655	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1410330	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1410331	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1410333	0.86[AFR][1000 genomes]
rs1555731	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1571322	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1590466	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1749987	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1752645	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1853721	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1856995	1.00[AMR][1000 genomes]
rs1885817	1.00[AMR][1000 genomes]
rs1980882	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2147567	1.00[AMR][1000 genomes]
rs2208941	1.00[AMR][1000 genomes]
rs2208944	1.00[AMR][1000 genomes]
rs2265032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2484341	1.00[AMR][1000 genomes]
rs2484342	1.00[AMR][1000 genomes]
rs2760109	1.00[AMR][1000 genomes]
rs2760110	1.00[AMR][1000 genomes]
rs2765081	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2783128	1.00[AMR][1000 genomes]
rs314691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs314696	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs314698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs314699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4052508	1.00[AMR][1000 genomes]
rs418177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4300513	1.00[AMR][1000 genomes]
rs450755	1.00[AMR][1000 genomes]
rs4884128	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4885630	1.00[AMR][1000 genomes]
rs4885648	1.00[AMR][1000 genomes]
rs4885654	1.00[AMR][1000 genomes]
rs6563092	1.00[AMR][1000 genomes]
rs6563099	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6563101	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6563102	1.00[AMR][1000 genomes]
rs6563103	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6563106	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6563108	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6563118	1.00[AMR][1000 genomes]
rs6563126	1.00[AMR][1000 genomes]
rs7324585	1.00[AMR][1000 genomes]
rs7325232	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7332248	1.00[AMR][1000 genomes]
rs7333651	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7334029	1.00[AMR][1000 genomes]
rs7993115	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7993478	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7994560	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7996740	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7996869	1.00[AMR][1000 genomes]
rs7998224	1.00[AMR][1000 genomes]
rs8001089	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8001822	1.00[AMR][1000 genomes]
rs927696	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9318630	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9318631	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9318637	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9530903	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9545056	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9545084	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9545096	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9545102	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9545105	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9545107	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9545111	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9601212	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832657	chr13:79904978-80099108	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv523979	chr13:79979679-80120263	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79980800-80007200	Weak transcription	Spleen	Spleen
2	chr13:79981000-80007200	Weak transcription	Aorta	Aorta
3	chr13:79981200-80010200	Weak transcription	Right Ventricle	heart
4	chr13:79982600-80006400	Weak transcription	Gastric	stomach
5	chr13:79998800-80006000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr13:80001800-80009000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr13:80003200-80009200	Weak transcription	Fetal Heart	heart

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