Variant report

Variant	rs450755
Chromosome Location	chr13:80018402-80018403
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:80017886..80019741-chr13:80021356..80023922,2	K562	blood:
2	chr13:79979786..79981696-chr13:80018288..80020196,2	K562	blood:

Variant related genes	Relation type
ENSG00000139746	Chromatin interaction
ENSG00000227354	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1324872	1.00[AMR][1000 genomes]
rs1328043	1.00[AMR][1000 genomes]
rs1328044	1.00[AMR][1000 genomes]
rs1328045	1.00[AMR][1000 genomes]
rs1335376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1359411	1.00[AMR][1000 genomes]
rs1408655	1.00[AMR][1000 genomes]
rs1410330	1.00[AMR][1000 genomes]
rs1410331	1.00[AMR][1000 genomes]
rs1555731	1.00[AMR][1000 genomes]
rs1571322	1.00[AMR][1000 genomes]
rs1590466	1.00[AMR][1000 genomes]
rs1749987	1.00[AMR][1000 genomes]
rs1752645	1.00[AMR][1000 genomes]
rs1853721	1.00[AMR][1000 genomes]
rs1856995	1.00[AMR][1000 genomes]
rs1885817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1980882	1.00[AMR][1000 genomes]
rs2146589	1.00[AMR][1000 genomes]
rs2147567	1.00[AMR][1000 genomes]
rs2208941	1.00[AMR][1000 genomes]
rs2208944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2224691	1.00[AMR][1000 genomes]
rs2265032	1.00[AMR][1000 genomes]
rs2484341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2484342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2760109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2760110	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2765081	1.00[AMR][1000 genomes]
rs2783128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs314691	1.00[AMR][1000 genomes]
rs314696	1.00[AMR][1000 genomes]
rs314697	1.00[AMR][1000 genomes]
rs314698	1.00[AMR][1000 genomes]
rs314699	1.00[AMR][1000 genomes]
rs4052508	1.00[AMR][1000 genomes]
rs418177	1.00[AMR][1000 genomes]
rs4300513	1.00[AMR][1000 genomes]
rs4884128	1.00[AMR][1000 genomes]
rs4885630	1.00[AMR][1000 genomes]
rs4885648	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4885654	1.00[AMR][1000 genomes]
rs6563092	1.00[AMR][1000 genomes]
rs6563099	1.00[AMR][1000 genomes]
rs6563101	1.00[AMR][1000 genomes]
rs6563102	1.00[AMR][1000 genomes]
rs6563103	1.00[AMR][1000 genomes]
rs6563106	1.00[AMR][1000 genomes]
rs6563108	1.00[AMR][1000 genomes]
rs6563118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6563126	1.00[AMR][1000 genomes]
rs7324585	1.00[AMR][1000 genomes]
rs7325232	1.00[AMR][1000 genomes]
rs7332248	1.00[AMR][1000 genomes]
rs7333651	1.00[AMR][1000 genomes]
rs7334029	1.00[AMR][1000 genomes]
rs7993115	1.00[AMR][1000 genomes]
rs7993478	1.00[AMR][1000 genomes]
rs7994560	1.00[AMR][1000 genomes]
rs7996740	1.00[AMR][1000 genomes]
rs7996869	1.00[AMR][1000 genomes]
rs7998224	1.00[AMR][1000 genomes]
rs8001089	1.00[AMR][1000 genomes]
rs8001822	1.00[AMR][1000 genomes]
rs927696	1.00[AMR][1000 genomes]
rs9318630	1.00[AMR][1000 genomes]
rs9318631	1.00[AMR][1000 genomes]
rs9318637	1.00[AMR][1000 genomes]
rs9530903	1.00[AMR][1000 genomes]
rs9545056	1.00[AMR][1000 genomes]
rs9545084	1.00[AMR][1000 genomes]
rs9545096	1.00[AMR][1000 genomes]
rs9545102	1.00[AMR][1000 genomes]
rs9545105	1.00[AMR][1000 genomes]
rs9545107	1.00[AMR][1000 genomes]
rs9545111	1.00[AMR][1000 genomes]
rs9601212	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832657	chr13:79904978-80099108	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv523979	chr13:79979679-80120263	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80010200-80025600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:80015400-80020200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr13:80016000-80019600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr13:80016200-80025800	Weak transcription	H1 Cell Line	embryonic stem cell

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