Variant report

Variant	rs1410335
Chromosome Location	chr13:79962048-79962049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:79958743..79963128-chr13:79965623..79969929,4	K562	blood:
2	chr13:79960135..79962154-chr13:79975987..79978661,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11838897	1.00[ASN][1000 genomes]
rs11841482	1.00[ASN][1000 genomes]
rs11841968	1.00[ASN][1000 genomes]
rs11843203	1.00[ASN][1000 genomes]
rs1335372	0.93[EUR][1000 genomes]
rs1410334	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17071316	1.00[ASN][1000 genomes]
rs17071385	0.85[EUR][1000 genomes]
rs17071415	0.85[EUR][1000 genomes]
rs35724140	1.00[ASN][1000 genomes]
rs41305026	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41364649	1.00[ASN][1000 genomes]
rs57544957	0.85[EUR][1000 genomes]
rs58043862	1.00[ASN][1000 genomes]
rs58069884	0.86[EUR][1000 genomes]
rs58264675	0.93[EUR][1000 genomes]
rs59773478	0.85[EUR][1000 genomes]
rs6563107	0.85[EUR][1000 genomes]
rs7139902	0.93[EUR][1000 genomes]
rs7318984	0.89[EUR][1000 genomes]
rs7325970	0.82[EUR][1000 genomes]
rs7329633	0.82[EUR][1000 genomes]
rs73548948	0.93[EUR][1000 genomes]
rs73560567	1.00[ASN][1000 genomes]
rs73566422	0.85[EUR][1000 genomes]
rs73566424	0.85[EUR][1000 genomes]
rs73566435	0.85[EUR][1000 genomes]
rs73566454	0.85[EUR][1000 genomes]
rs73566469	0.82[EUR][1000 genomes]
rs7983312	0.82[EUR][1000 genomes]
rs7985220	0.86[EUR][1000 genomes]
rs7992181	0.85[EUR][1000 genomes]
rs7994370	1.00[ASN][1000 genomes]
rs7995717	0.82[EUR][1000 genomes]
rs7996153	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900586	chr13:79892722-79968467	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv832657	chr13:79904978-80099108	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79942000-79967400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:79946400-79969200	Weak transcription	Fetal Kidney	kidney
3	chr13:79951200-79962200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:79951200-79979200	Weak transcription	Esophagus	oesophagus
5	chr13:79951400-79962200	Weak transcription	Lung	lung
6	chr13:79951600-79965400	Weak transcription	Brain Angular Gyrus	brain
7	chr13:79951600-79969000	Weak transcription	Fetal Brain Male	brain
8	chr13:79951800-79978200	Weak transcription	Aorta	Aorta
9	chr13:79952000-79967200	Weak transcription	Brain Hippocampus Middle	brain
10	chr13:79952000-79967600	Weak transcription	Gastric	stomach
11	chr13:79952200-79967600	Weak transcription	Pancreas	Pancrea
12	chr13:79952200-79967600	Weak transcription	Spleen	Spleen
13	chr13:79952400-79962200	Weak transcription	Psoas Muscle	Psoas
14	chr13:79952400-79963000	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr13:79952400-79963600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr13:79952400-79966800	Weak transcription	Thymus	Thymus
17	chr13:79952400-79967000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr13:79952400-79967200	Weak transcription	Brain Cingulate Gyrus	brain
19	chr13:79952400-79967200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr13:79952400-79967200	Weak transcription	Fetal Lung	lung
21	chr13:79952400-79967400	Weak transcription	Fetal Brain Female	brain
22	chr13:79952400-79967600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr13:79952400-79967600	Weak transcription	Left Ventricle	heart
24	chr13:79952400-79967600	Weak transcription	Right Ventricle	heart
25	chr13:79952400-79967800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr13:79952600-79966800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr13:79952600-79977800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr13:79952800-79966800	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr13:79952800-79966800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr13:79952800-79967200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr13:79952800-79967200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr13:79952800-79967800	Weak transcription	Fetal Stomach	stomach
33	chr13:79953000-79967200	Weak transcription	Fetal Muscle Trunk	muscle
34	chr13:79953000-79967200	Weak transcription	Fetal Muscle Leg	muscle
35	chr13:79953000-79967400	Weak transcription	Placenta	Placenta
36	chr13:79953200-79967400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr13:79953400-79966800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr13:79954200-79966200	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr13:79954400-79965200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr13:79954400-79969000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr13:79955000-79966200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr13:79955600-79966200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr13:79956000-79962200	Enhancers	Primary T killer memory cells from peripheral blood	blood
44	chr13:79956800-79966200	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr13:79957000-79967200	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr13:79957000-79967200	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr13:79957200-79962800	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr13:79957200-79967000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr13:79957200-79967000	Weak transcription	Duodenum Mucosa	Duodenum
50	chr13:79957200-79967200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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