Variant report

Variant	rs58069884
Chromosome Location	chr13:80037357-80037358
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10492579	0.82[EUR][1000 genomes]
rs10507899	0.82[EUR][1000 genomes]
rs11838700	1.00[ASN][1000 genomes]
rs11839689	1.00[ASN][1000 genomes]
rs11840407	1.00[ASN][1000 genomes]
rs11841756	1.00[ASN][1000 genomes]
rs11843917	1.00[ASN][1000 genomes]
rs1335372	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1410334	0.86[EUR][1000 genomes]
rs1410335	0.86[EUR][1000 genomes]
rs1414157	0.82[EUR][1000 genomes]
rs17071492	1.00[ASN][1000 genomes]
rs17071499	0.89[EUR][1000 genomes]
rs17071532	0.82[EUR][1000 genomes]
rs17071566	0.82[EUR][1000 genomes]
rs17071574	0.82[EUR][1000 genomes]
rs17071585	0.82[EUR][1000 genomes]
rs17071589	1.00[ASN][1000 genomes]
rs17071627	0.82[EUR][1000 genomes]
rs17071629	1.00[ASN][1000 genomes]
rs17431002	1.00[ASN][1000 genomes]
rs41288268	0.89[EUR][1000 genomes]
rs4884132	1.00[ASN][1000 genomes]
rs4885635	1.00[ASN][1000 genomes]
rs4885639	1.00[ASN][1000 genomes]
rs4885641	1.00[ASN][1000 genomes]
rs55820419	1.00[ASN][1000 genomes]
rs56711390	0.82[EUR][1000 genomes]
rs56863569	1.00[ASN][1000 genomes]
rs57032852	0.82[EUR][1000 genomes]
rs58056613	0.85[EUR][1000 genomes]
rs58233612	1.00[ASN][1000 genomes]
rs58264675	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58406632	0.82[EUR][1000 genomes]
rs59251364	1.00[ASN][1000 genomes]
rs59319360	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59783325	0.82[EUR][1000 genomes]
rs60016606	1.00[ASN][1000 genomes]
rs61676417	0.82[EUR][1000 genomes]
rs6563111	1.00[ASN][1000 genomes]
rs6563117	0.82[EUR][1000 genomes]
rs67435118	1.00[ASN][1000 genomes]
rs7139902	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7317511	0.82[EUR][1000 genomes]
rs73235960	1.00[ASN][1000 genomes]
rs7325970	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7327148	0.82[EUR][1000 genomes]
rs7329633	0.82[EUR][1000 genomes]
rs7337908	1.00[ASN][1000 genomes]
rs7338043	0.82[EUR][1000 genomes]
rs7338662	1.00[ASN][1000 genomes]
rs73548905	1.00[ASN][1000 genomes]
rs73548913	1.00[ASN][1000 genomes]
rs73548931	1.00[ASN][1000 genomes]
rs73548932	1.00[ASN][1000 genomes]
rs73548936	1.00[ASN][1000 genomes]
rs73548939	1.00[ASN][1000 genomes]
rs73548948	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73548951	0.89[EUR][1000 genomes]
rs73548952	1.00[ASN][1000 genomes]
rs73548955	0.89[EUR][1000 genomes]
rs73548962	1.00[ASN][1000 genomes]
rs73548974	1.00[ASN][1000 genomes]
rs73551514	1.00[ASN][1000 genomes]
rs73551516	1.00[ASN][1000 genomes]
rs73551558	0.89[EUR][1000 genomes]
rs73551595	0.82[EUR][1000 genomes]
rs73551596	0.82[EUR][1000 genomes]
rs73551597	0.82[EUR][1000 genomes]
rs73551601	0.82[EUR][1000 genomes]
rs73551602	0.82[EUR][1000 genomes]
rs73553403	0.82[EUR][1000 genomes]
rs73553424	0.82[EUR][1000 genomes]
rs73553431	0.82[EUR][1000 genomes]
rs73553447	0.82[EUR][1000 genomes]
rs73553473	0.82[EUR][1000 genomes]
rs74098308	1.00[ASN][1000 genomes]
rs74098315	1.00[ASN][1000 genomes]
rs74098399	1.00[ASN][1000 genomes]
rs7491258	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7981574	0.82[EUR][1000 genomes]
rs7983312	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7984159	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7984598	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7985220	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7985239	1.00[ASN][1000 genomes]
rs7985291	1.00[ASN][1000 genomes]
rs7985697	0.89[EUR][1000 genomes]
rs7990190	0.82[EUR][1000 genomes]
rs7990464	0.82[EUR][1000 genomes]
rs7991663	1.00[ASN][1000 genomes]
rs7992646	1.00[ASN][1000 genomes]
rs7995350	1.00[ASN][1000 genomes]
rs7995408	1.00[ASN][1000 genomes]
rs7995717	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7997554	0.85[EUR][1000 genomes]
rs7998452	0.82[EUR][1000 genomes]
rs8000870	0.89[EUR][1000 genomes]
rs8002638	1.00[ASN][1000 genomes]
rs9530936	1.00[ASN][1000 genomes]
rs9545129	1.00[ASN][1000 genomes]
rs9545132	1.00[ASN][1000 genomes]
rs9545143	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832657	chr13:79904978-80099108	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv523979	chr13:79979679-80120263	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80034200-80039400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:80036800-80037400	Enhancers	Liver	Liver

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