Variant report

Variant	rs73235960
Chromosome Location	chr13:80135235-80135236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs11549502	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11838700	1.00[ASN][1000 genomes]
rs11838769	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11839222	0.89[AMR][1000 genomes]
rs11839689	1.00[ASN][1000 genomes]
rs11840407	1.00[ASN][1000 genomes]
rs11841756	1.00[ASN][1000 genomes]
rs11843917	1.00[ASN][1000 genomes]
rs1335372	1.00[ASN][1000 genomes]
rs17071492	1.00[ASN][1000 genomes]
rs17071589	1.00[ASN][1000 genomes]
rs17071629	1.00[ASN][1000 genomes]
rs17431002	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4884132	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885635	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885641	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55820419	1.00[ASN][1000 genomes]
rs56863569	1.00[ASN][1000 genomes]
rs58069884	1.00[ASN][1000 genomes]
rs58233612	1.00[ASN][1000 genomes]
rs58264675	1.00[ASN][1000 genomes]
rs59251364	1.00[ASN][1000 genomes]
rs59319360	1.00[ASN][1000 genomes]
rs60016606	1.00[ASN][1000 genomes]
rs6563111	1.00[ASN][1000 genomes]
rs67435118	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7139902	1.00[ASN][1000 genomes]
rs7321672	0.89[AMR][1000 genomes]
rs73234683	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73234690	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7325970	1.00[ASN][1000 genomes]
rs7337908	1.00[ASN][1000 genomes]
rs7338662	1.00[ASN][1000 genomes]
rs73548905	1.00[ASN][1000 genomes]
rs73548913	1.00[ASN][1000 genomes]
rs73548931	1.00[ASN][1000 genomes]
rs73548932	1.00[ASN][1000 genomes]
rs73548936	1.00[ASN][1000 genomes]
rs73548939	1.00[ASN][1000 genomes]
rs73548952	1.00[ASN][1000 genomes]
rs73548962	1.00[ASN][1000 genomes]
rs73548974	1.00[ASN][1000 genomes]
rs73551514	1.00[ASN][1000 genomes]
rs73551516	1.00[ASN][1000 genomes]
rs7399942	0.81[EUR][1000 genomes]
rs74098308	1.00[ASN][1000 genomes]
rs74098315	1.00[ASN][1000 genomes]
rs74098399	1.00[ASN][1000 genomes]
rs7983288	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7983312	1.00[ASN][1000 genomes]
rs7983516	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7985220	1.00[ASN][1000 genomes]
rs7985239	1.00[ASN][1000 genomes]
rs7985291	1.00[ASN][1000 genomes]
rs7990729	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7991663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7992646	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7995350	1.00[ASN][1000 genomes]
rs7995408	1.00[ASN][1000 genomes]
rs7995717	1.00[ASN][1000 genomes]
rs8000301	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs8002638	1.00[ASN][1000 genomes]
rs9530926	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9530927	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9530928	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9530932	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9530933	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9530935	0.81[EUR][1000 genomes]
rs9530936	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9545119	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9545126	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9545127	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9545129	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9545130	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9545132	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9545140	0.81[EUR][1000 genomes]
rs9545141	0.81[EUR][1000 genomes]
rs9545143	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9545144	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916983	chr13:80065879-80249702	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1041994	chr13:80123596-80247708	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80100600-80136400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr13:80130600-80135600	ZNF genes & repeats	NHEK	skin
3	chr13:80131800-80135600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr13:80131800-80135600	ZNF genes & repeats	HMEC	breast
5	chr13:80132000-80135800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr13:80132200-80136000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr13:80133000-80135800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
8	chr13:80133200-80135400	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
9	chr13:80133200-80135400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
10	chr13:80133200-80135600	ZNF genes & repeats	Fetal Intestine Small	intestine
11	chr13:80133400-80137000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr13:80133600-80135400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
13	chr13:80133600-80135600	Weak transcription	Osteobl	bone
14	chr13:80133600-80136000	Weak transcription	Primary T cells from cord blood	blood
15	chr13:80134000-80135400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
16	chr13:80134000-80138800	Weak transcription	Left Ventricle	heart
17	chr13:80134200-80135400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
18	chr13:80134200-80135600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr13:80134200-80136400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr13:80134400-80135600	ZNF genes & repeats	Fetal Muscle Leg	muscle
21	chr13:80135000-80135600	Enhancers	Placenta	Placenta
22	chr13:80135200-80135400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr13:80135200-80135400	Active TSS	Rectal Mucosa Donor 31	rectum
24	chr13:80135200-80135800	Weak transcription	Dnd41	blood

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