Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11549502	0.84[EUR][1000 genomes]
rs11838769	0.82[EUR][1000 genomes]
rs17431002	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4884132	0.81[EUR][1000 genomes]
rs4885635	0.81[EUR][1000 genomes]
rs4885639	0.81[EUR][1000 genomes]
rs4885641	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73234683	0.81[EUR][1000 genomes]
rs73234690	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs73235960	0.81[EUR][1000 genomes]
rs7399942	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7983288	0.81[EUR][1000 genomes]
rs7983516	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7990729	0.84[EUR][1000 genomes]
rs7991663	0.81[EUR][1000 genomes]
rs9530926	0.81[EUR][1000 genomes]
rs9530927	0.81[EUR][1000 genomes]
rs9530928	0.82[EUR][1000 genomes]
rs9530932	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9530933	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9530935	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9530936	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9545119	0.82[EUR][1000 genomes]
rs9545126	0.81[EUR][1000 genomes]
rs9545127	0.82[EUR][1000 genomes]
rs9545129	0.81[EUR][1000 genomes]
rs9545130	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9545132	0.81[EUR][1000 genomes]
rs9545140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9545143	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9545144	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916983	chr13:80065879-80249702	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1041994	chr13:80123596-80247708	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80140600-80155800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:80155600-80156600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr13:80155600-80156600	Enhancers	Brain Hippocampus Middle	brain
4	chr13:80155600-80156600	Enhancers	Esophagus	oesophagus
5	chr13:80155600-80156600	Enhancers	Placenta	Placenta
6	chr13:80155600-80156600	Enhancers	HSMMtube	muscle
7	chr13:80155600-80156800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr13:80155600-80156800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr13:80155600-80156800	Enhancers	Fetal Muscle Leg	muscle

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