Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11549502	0.84[EUR][1000 genomes]
rs11838769	0.82[EUR][1000 genomes]
rs17431002	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4884132	0.81[EUR][1000 genomes]
rs4885635	0.81[EUR][1000 genomes]
rs4885639	0.81[EUR][1000 genomes]
rs4885641	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73234683	0.81[EUR][1000 genomes]
rs73234690	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs73235960	0.81[EUR][1000 genomes]
rs7399942	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7983288	0.81[EUR][1000 genomes]
rs7983516	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7990729	0.84[EUR][1000 genomes]
rs7991663	0.81[EUR][1000 genomes]
rs9530926	0.81[EUR][1000 genomes]
rs9530927	0.81[EUR][1000 genomes]
rs9530928	0.82[EUR][1000 genomes]
rs9530932	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9530933	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9530935	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9530936	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9545119	0.82[EUR][1000 genomes]
rs9545126	0.81[EUR][1000 genomes]
rs9545127	0.82[EUR][1000 genomes]
rs9545129	0.81[EUR][1000 genomes]
rs9545130	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9545132	0.81[EUR][1000 genomes]
rs9545140	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9545141	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9545143	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916983	chr13:80065879-80249702	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1041994	chr13:80123596-80247708	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80164200-80167400	Weak transcription	HSMM	muscle
2	chr13:80164400-80167400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr13:80164400-80167400	Weak transcription	HSMMtube	muscle
4	chr13:80164600-80165400	Enhancers	Adipose Nuclei	Adipose
5	chr13:80164600-80167200	Weak transcription	Osteobl	bone
6	chr13:80164600-80167800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr13:80164600-80169800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr13:80164800-80165800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr13:80164800-80165800	Enhancers	NHEK	skin
10	chr13:80164800-80167200	Weak transcription	Fetal Muscle Leg	muscle
11	chr13:80165000-80165800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr13:80165000-80166000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr13:80165000-80166200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr13:80165000-80166200	Enhancers	HMEC	breast
15	chr13:80165200-80165600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr13:80165200-80165800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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